Co-expression analysis

Gene ID Os06g0147000
Gene name
Homology with ArabidopsisSimilar to At4g28830: methyltransferase/ nucleic acid binding (HF=3e-1)
Module size 8 genes
NF 0.54
%ile 72.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6382.70.81Os06g0147000AK120978.1-Conserved hypothetical protein3e-1At4g28830methyltransferase/ nucleic acid bindingO.I.H.G.S.X.
0.6787.20.80Os05g04572009633.m03549-Protein phosphatase-2C2e-7At1g07430protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.
0.5978.00.80Os09g0555500AK108154.1-Phytoene synthase (Fragment)8e-4At5g17230phytoene synthase (PSY) / geranylgeranyl-diphosphate geranylgeranyl transferaseO.I.H.G.S.X.
0.5777.00.81Os07g0687900D26537.1-WSI76 protein induced by water stress4e-24At1g09350AtGolS3 (Arabidopsis thaliana galactinol synthase 3)O.I.H.G.S.X.
0.5371.30.81Os07g0154100AK119780.1-The start codon is not identified.3e-4At3g14440NCED3 (NINE-CIS-EPOXYCAROTENOID DIOXYGENASE 3)O.I.H.G.S.X.
0.5068.00.82Os03g01251009631.m00248-Beta-carotene hydroxylase1e-11At5g52570BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2)O.I.H.G.S.X.
0.3846.90.83Os12g0478200AK063578.1-GRAM domain containing protein4e-4At5g23360GRAM domain-containing protein / ABA-responsive protein-relatedO.I.H.G.S.X.
0.3338.80.83Os01g0846300AK065949.1-Protein phpsphatase 2C (PP2C) (EC 3.1.3.16)9e-1At5g59220protein phosphatase 2C, putative / PP2C, putativeO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.998.7GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.898.7GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.798.7GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.298.7GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.098.5GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.998.5GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.498.5GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.298.4GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.298.4GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.498.3GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0801GO:0016051The chemical reactions and pathways resulting in the formation of carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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