CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0127700

Gene name
Homology with Arabidopsis Similar to At4g10770: OPT7 (OLIGOPEPTIDE TRANSPORTER 7) (HF=2e-6)

Module size 39 genes

NF 0.04

%ile 2.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.97 99.9 0.87 Os06g0127700 AK072617.1 - - 2e-6 At4g10770 OPT7 (OLIGOPEPTIDE TRANSPORTER 7) O.I. H.G. S.X.
0.22 19.4 0.95 Os02g0743700 AK070302.1 - Zn-finger, RING domain containing protein 7e-1 At1g74410 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.20 16.5 0.86 Os06g0157700 AB052943.1 - SP3D 2e-3 At1g65480 FT (FLOWERING LOCUS T) O.I. H.G. S.X.
0.17 12.6 0.95 Os10g0560200 AK069913.1 - Uncharacterized Cys-rich domain containing protein 4e-5 At2g45010 unknown protein O.I. H.G. S.X.
0.17 12.6 0.95 Os02g0221300 AK065896.1 - Eukaryotic initiation factor 4A (eIF4A) (eIF-4A) 7e+0 At5g10300 MES5 (METHYL ESTERASE 5) O.I. H.G. S.X.
0.16 11.3 0.94 Os02g0204500 CB627779 - Agenet domain containing protein 1e+0 At5g28615 - O.I. H.G. S.X.
0.16 11.3 0.89 Os02g0828500 AK105163.1 - TPR-like domain containing protein 5e-2 At5g19090 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.15 10.3 0.94 Os01g0730200 AK070812.1 - Cyclin-like F-box domain containing protein 4e+0 At5g01800 saposin B domain-containing protein O.I. H.G. S.X.
0.15 10.3 0.93 Os07g0272800 AK107279.1 - Hypothetical protein 8e-1 At5g27830 - O.I. H.G. S.X.
0.14 9.3 0.95 Os11g0545800 AK073687.1 - Regulator of chromosome condensation, RCC1 repeatcontaining protein 3e-3 At5g08710 regulator of chromosome condensation (RCC1) family protein / UVB-resistance protein-related O.I. H.G. S.X.
0.12 7.2 0.90 Os06g0605600 AK106613.1 - Conserved hypothetical protein 5e-5 At4g21440 ATMYB102 (ARABIDOPSIS MYB-LIKE 102) O.I. H.G. S.X.
0.11 6.5 0.93 Os07g0121100 AK102706.1 - Conserved hypothetical protein 3e-1 At3g48298 unknown protein O.I. H.G. S.X.
0.11 6.5 0.95 Os12g0615100 AK067120.1 - Protein kinase domain containing protein 1e-2 At5g48740 leucine-rich repeat family protein / protein kinase family protein O.I. H.G. S.X.
0.11 6.5 0.96 Os02g0202800 AK102082.1 - FAR1 domain containing protein 8e-2 At4g35040 bZIP transcription factor family protein O.I. H.G. S.X.
0.10 5.7 0.96 Os05g0422600 CF197185 - Conserved hypothetical protein 7e+0 At5g48020 unknown protein O.I. H.G. S.X.
0.10 5.7 0.95 Os02g0235000 9630.m01296 - ARP2/3 complex, 21 kDa p21-Arc subunit familyprotein 2e+0 At1g60430 ARPC3 (actin-related protein C3) O.I. H.G. S.X.
0.10 5.7 0.93 Os04g0528000 9632.m04281 - Protein of unknown function DUF789 family protein 1e-1 At1g03610 unknown protein O.I. H.G. S.X.
0.09 4.9 0.96 Os05g0371100 9633.m02799 - CW-type Zn-finger domain containing protein 2e-3 At1g02990 - O.I. H.G. S.X.
0.09 4.9 0.95 Os05g0374500 AK064447.1 - TPR-like domain containing protein 1e-3 At5g12430 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.09 4.9 0.91 Os01g0190400 AK064011.1 - Hexokinase 2e-1 At2g19860 HXK2 (HEXOKINASE 2) O.I. H.G. S.X.
0.09 4.9 0.96 Os05g0337500 CB640460 - Conserved hypothetical protein 3e-1 At1g63310 - O.I. H.G. S.X.
0.08 4.2 0.95 Os12g0127500 AK064595.1 - - 3e-3 At5g43410 ethylene-responsive factor, putative O.I. H.G. S.X.
0.08 4.2 0.96 Os07g0641800 AK071367.1 - Conserved hypothetical protein 2e+0 At4g27380 unknown protein O.I. H.G. S.X.
0.08 4.2 0.95 Os03g0828800 AK107160.1 - Curculin-like (mannose-binding) lectin domaincontaining protein 2e-2 At3g58690 protein kinase family protein O.I. H.G. S.X.
0.07 3.7 0.91 Os02g0304500 9630.m01925 - - 8e+0 At5g56260 dimethylmenaquinone methyltransferase family protein O.I. H.G. S.X.
0.07 3.7 0.95 Os03g0661900 AK072616.1 - Peptidase, trypsin-like serine and cysteineproteases domain containing protein 8e-1 At5g53820 unknown protein O.I. H.G. S.X.
0.06 3.0 0.93 Os04g0162100 AY321106.1 - Conserved hypothetical protein 2e-24 At5g51230 EMF2 (EMBRYONIC FLOWER 2) O.I. H.G. S.X.
0.06 3.0 0.97 Os08g0154000 AK063541.1 - O-methyltransferase, family 3 protein 2e+0 At3g62000 O-methyltransferase family 3 protein O.I. H.G. S.X.
0.06 3.0 0.93 Os03g0610700 AK121227.1 - Serpin 2e+0 At1g58007 unknown protein O.I. H.G. S.X.
0.06 3.0 0.95 Os07g0637100 AK111132.1 - Heat shock protein DnaJ, N-terminal domaincontaining protein 3e-1 At1g15390 PDF1A (PEPTIDE DEFORMYLASE 1A) O.I. H.G. S.X.
0.06 3.0 0.96 Os04g0448100 AK108771.1 - Conserved hypothetical protein 4e-2 At4g08460 protein binding / zinc ion binding O.I. H.G. S.X.
0.04 2.0 0.94 Os03g0210200 AK111138.1 - Proteinase inhibitor I25, cystatin family protein 4e+0 At5g45350 proline-rich family protein O.I. H.G. S.X.
0.03 1.4 0.96 Os08g0519000 9636.m04121 - Hypothetical protein 2e+0 At5g43960 nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein O.I. H.G. S.X.
0.03 1.4 0.93 Os08g0103900 AK071064.1 - NAM-like protein 5e-1 At5g62380 ANAC101 (ARABIDOPSIS NAC-DOMAIN PROTEIN 101) O.I. H.G. S.X.
0.03 1.4 0.93 Os02g0571300 AK121446.1 - Terpene synthase-like domain containing protein 4e-1 At1g32990 PRPL11 (PLASTID RIBOSOMAL PROTEIN L11) O.I. H.G. S.X.
0.02 1.0 0.94 Os01g0231500 AK111602.1 - Casein kinase I 2e-43 At4g28860 ckl4 (Casein Kinase I-like 4) O.I. H.G. S.X.
0.02 1.0 0.95 Os11g0656500 AK072370.1 - The start codon is not identified. 2e+0 At4g01410 harpin-induced family protein / HIN1 family protein / harpin-responsive family protein O.I. H.G. S.X.
0.01 0.5 0.93 Os10g0392600 AK108539.1 - SPX, N-terminal domain containing protein 2e+0 At5g42232 - O.I. H.G. S.X.
0.01 0.5 0.87 Os10g0198900 CA763958 - Protein of unknown function DUF6 domain containingprotein 6e+0 At3g16700 fumarylacetoacetate hydrolase family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.97	99.9	0.87	Os06g0127700	AK072617.1	-	-	2e-6	At4g10770	OPT7 (OLIGOPEPTIDE TRANSPORTER 7)	O.I.	H.G.	S.X.
0.22	19.4	0.95	Os02g0743700	AK070302.1	-	Zn-finger, RING domain containing protein	7e-1	At1g74410	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.20	16.5	0.86	Os06g0157700	AB052943.1	-	SP3D	2e-3	At1g65480	FT (FLOWERING LOCUS T)	O.I.	H.G.	S.X.
0.17	12.6	0.95	Os10g0560200	AK069913.1	-	Uncharacterized Cys-rich domain containing protein	4e-5	At2g45010	unknown protein	O.I.	H.G.	S.X.
0.17	12.6	0.95	Os02g0221300	AK065896.1	-	Eukaryotic initiation factor 4A (eIF4A) (eIF-4A)	7e+0	At5g10300	MES5 (METHYL ESTERASE 5)	O.I.	H.G.	S.X.
0.16	11.3	0.94	Os02g0204500	CB627779	-	Agenet domain containing protein	1e+0	At5g28615	-	O.I.	H.G.	S.X.
0.16	11.3	0.89	Os02g0828500	AK105163.1	-	TPR-like domain containing protein	5e-2	At5g19090	heavy-metal-associated domain-containing protein	O.I.	H.G.	S.X.
0.15	10.3	0.94	Os01g0730200	AK070812.1	-	Cyclin-like F-box domain containing protein	4e+0	At5g01800	saposin B domain-containing protein	O.I.	H.G.	S.X.
0.15	10.3	0.93	Os07g0272800	AK107279.1	-	Hypothetical protein	8e-1	At5g27830	-	O.I.	H.G.	S.X.
0.14	9.3	0.95	Os11g0545800	AK073687.1	-	Regulator of chromosome condensation, RCC1 repeatcontaining protein	3e-3	At5g08710	regulator of chromosome condensation (RCC1) family protein / UVB-resistance protein-related	O.I.	H.G.	S.X.
0.12	7.2	0.90	Os06g0605600	AK106613.1	-	Conserved hypothetical protein	5e-5	At4g21440	ATMYB102 (ARABIDOPSIS MYB-LIKE 102)	O.I.	H.G.	S.X.
0.11	6.5	0.93	Os07g0121100	AK102706.1	-	Conserved hypothetical protein	3e-1	At3g48298	unknown protein	O.I.	H.G.	S.X.
0.11	6.5	0.95	Os12g0615100	AK067120.1	-	Protein kinase domain containing protein	1e-2	At5g48740	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.
0.11	6.5	0.96	Os02g0202800	AK102082.1	-	FAR1 domain containing protein	8e-2	At4g35040	bZIP transcription factor family protein	O.I.	H.G.	S.X.
0.10	5.7	0.96	Os05g0422600	CF197185	-	Conserved hypothetical protein	7e+0	At5g48020	unknown protein	O.I.	H.G.	S.X.
0.10	5.7	0.95	Os02g0235000	9630.m01296	-	ARP2/3 complex, 21 kDa p21-Arc subunit familyprotein	2e+0	At1g60430	ARPC3 (actin-related protein C3)	O.I.	H.G.	S.X.
0.10	5.7	0.93	Os04g0528000	9632.m04281	-	Protein of unknown function DUF789 family protein	1e-1	At1g03610	unknown protein	O.I.	H.G.	S.X.
0.09	4.9	0.96	Os05g0371100	9633.m02799	-	CW-type Zn-finger domain containing protein	2e-3	At1g02990	-	O.I.	H.G.	S.X.
0.09	4.9	0.95	Os05g0374500	AK064447.1	-	TPR-like domain containing protein	1e-3	At5g12430	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.
0.09	4.9	0.91	Os01g0190400	AK064011.1	-	Hexokinase	2e-1	At2g19860	HXK2 (HEXOKINASE 2)	O.I.	H.G.	S.X.
0.09	4.9	0.96	Os05g0337500	CB640460	-	Conserved hypothetical protein	3e-1	At1g63310	-	O.I.	H.G.	S.X.
0.08	4.2	0.95	Os12g0127500	AK064595.1	-	-	3e-3	At5g43410	ethylene-responsive factor, putative	O.I.	H.G.	S.X.
0.08	4.2	0.96	Os07g0641800	AK071367.1	-	Conserved hypothetical protein	2e+0	At4g27380	unknown protein	O.I.	H.G.	S.X.
0.08	4.2	0.95	Os03g0828800	AK107160.1	-	Curculin-like (mannose-binding) lectin domaincontaining protein	2e-2	At3g58690	protein kinase family protein	O.I.	H.G.	S.X.
0.07	3.7	0.91	Os02g0304500	9630.m01925	-	-	8e+0	At5g56260	dimethylmenaquinone methyltransferase family protein	O.I.	H.G.	S.X.
0.07	3.7	0.95	Os03g0661900	AK072616.1	-	Peptidase, trypsin-like serine and cysteineproteases domain containing protein	8e-1	At5g53820	unknown protein	O.I.	H.G.	S.X.
0.06	3.0	0.93	Os04g0162100	AY321106.1	-	Conserved hypothetical protein	2e-24	At5g51230	EMF2 (EMBRYONIC FLOWER 2)	O.I.	H.G.	S.X.
0.06	3.0	0.97	Os08g0154000	AK063541.1	-	O-methyltransferase, family 3 protein	2e+0	At3g62000	O-methyltransferase family 3 protein	O.I.	H.G.	S.X.
0.06	3.0	0.93	Os03g0610700	AK121227.1	-	Serpin	2e+0	At1g58007	unknown protein	O.I.	H.G.	S.X.
0.06	3.0	0.95	Os07g0637100	AK111132.1	-	Heat shock protein DnaJ, N-terminal domaincontaining protein	3e-1	At1g15390	PDF1A (PEPTIDE DEFORMYLASE 1A)	O.I.	H.G.	S.X.
0.06	3.0	0.96	Os04g0448100	AK108771.1	-	Conserved hypothetical protein	4e-2	At4g08460	protein binding / zinc ion binding	O.I.	H.G.	S.X.
0.04	2.0	0.94	Os03g0210200	AK111138.1	-	Proteinase inhibitor I25, cystatin family protein	4e+0	At5g45350	proline-rich family protein	O.I.	H.G.	S.X.
0.03	1.4	0.96	Os08g0519000	9636.m04121	-	Hypothetical protein	2e+0	At5g43960	nuclear transport factor 2 (NTF2) family protein / RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.
0.03	1.4	0.93	Os08g0103900	AK071064.1	-	NAM-like protein	5e-1	At5g62380	ANAC101 (ARABIDOPSIS NAC-DOMAIN PROTEIN 101)	O.I.	H.G.	S.X.
0.03	1.4	0.93	Os02g0571300	AK121446.1	-	Terpene synthase-like domain containing protein	4e-1	At1g32990	PRPL11 (PLASTID RIBOSOMAL PROTEIN L11)	O.I.	H.G.	S.X.
0.02	1.0	0.94	Os01g0231500	AK111602.1	-	Casein kinase I	2e-43	At4g28860	ckl4 (Casein Kinase I-like 4)	O.I.	H.G.	S.X.
0.02	1.0	0.95	Os11g0656500	AK072370.1	-	The start codon is not identified.	2e+0	At4g01410	harpin-induced family protein / HIN1 family protein / harpin-responsive family protein	O.I.	H.G.	S.X.
0.01	0.5	0.93	Os10g0392600	AK108539.1	-	SPX, N-terminal domain containing protein	2e+0	At5g42232	-	O.I.	H.G.	S.X.
0.01	0.5	0.87	Os10g0198900	CA763958	-	Protein of unknown function DUF6 domain containingprotein	6e+0	At3g16700	fumarylacetoacetate hydrolase family protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
36.2 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.1 98.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.5 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.2 98.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
36.2	99.8	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
17.1	98.8	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.5	98.2	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2	98.2	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6	98.1	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
10.2	98.0	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8	98.0	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4	97.9	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3	97.9	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2	97.9	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.050 1 GO:0030833 Any process that modulates the frequency, rate or extent of the assembly of actin filaments by the addition of actin monomers to a filament.
0.049 1 GO:0048572 A change in state or activity of the organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a day length that falls short of a particular duration known as the 'critical day length'. The critical day length varies between species. Although the term short-day is used, most species actually respond to the duration of the night, so that the response will occur when a period of darkness exceeds the number of hours defined by 24 hours minus the critical day length.
0.048 1 GO:0048510 The process controlling the point in time during development when a vegetative meristem will change its identity to become an inflorescence or floral meristem, and/or the rate at which the change occurs.

SF	Genes	GO ID	Process Name
0.050	1	GO:0030833	Any process that modulates the frequency, rate or extent of the assembly of actin filaments by the addition of actin monomers to a filament.
0.049	1	GO:0048572	A change in state or activity of the organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a day length that falls short of a particular duration known as the 'critical day length'. The critical day length varies between species. Although the term short-day is used, most species actually respond to the duration of the night, so that the response will occur when a period of darkness exceeds the number of hours defined by 24 hours minus the critical day length.
0.048	1	GO:0048510	The process controlling the point in time during development when a vegetative meristem will change its identity to become an inflorescence or floral meristem, and/or the rate at which the change occurs.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os06g0127700
Gene name
Homology with Arabidopsis	Similar to At4g10770: OPT7 (OLIGOPEPTIDE TRANSPORTER 7) (HF=2e-6)
Module size	39 genes
NF	0.04
%ile	2.7

Co-expression analysis

Gene ID Os06g0127700 Gene name Homology with ArabidopsisSimilar to At4g10770: OPT7 (OLIGOPEPTIDE TRANSPORTER 7) (HF=2e-6) Module size 39 genes NF 0.04 %ile 2.7

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os06g0127700

Gene name
Homology with Arabidopsis Similar to At4g10770: OPT7 (OLIGOPEPTIDE TRANSPORTER 7) (HF=2e-6)

Module size 39 genes

NF 0.04

%ile 2.7

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays