CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0123000

Gene name
Homology with Arabidopsis Similar to At2g47420: dimethyladenosine transferase, putative (HF=8e+0)

Module size 6 genes

NF 0.45

%ile 57.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.88 Os06g0123000 AK108643.1 - Hypothetical protein 8e+0 At2g47420 dimethyladenosine transferase, putative O.I. H.G. S.X.
0.61 81.2 0.90 Os12g0274200 AK063071.1 - Lipolytic enzyme, G-D-S-L family protein 8e-6 At1g71691 GDSL-motif lipase/hydrolase family protein O.I. H.G. S.X.
0.53 71.3 0.87 Os07g0206900 AK107761.1 - Conserved hypothetical protein 1e+0 At4g18900 transducin family protein / WD-40 repeat family protein O.I. H.G. S.X.
0.53 71.3 0.90 Os07g0105900 AK059175.1 - NB-ARC domain containing protein 1e-2 At2g22430 ATHB6 O.I. H.G. S.X.
0.33 38.8 0.88 Os08g0433400 AK059468.1 - Myb, DNA-binding domain containing protein 2e-20 At3g01140 MYB106 (myb domain protein 106) O.I. H.G. S.X.
0.23 21.2 0.88 Os08g0550500 AK058423.1 - Conserved hypothetical protein 4e+0 At5g41440 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.1 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
22.3 99.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.9 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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