Co-expression analysis

Gene ID Os06g0117250
Gene name
Homology with ArabidopsisSimilar to At1g03140: splicing factor Prp18 family protein (HF=1e+0)
Module size 7 genes
NF 0.12
%ile 9.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8696.40.98Os06g01172509634.m00190--1e+0At1g03140splicing factor Prp18 family proteinO.I.H.G.S.X.
0.1915.10.98Os01g0208800AK109734.1-Conserved hypothetical protein4e-12At2g42600ATPPC2 (PHOSPHOENOLPYRUVATE CARBOXYLASE 2)O.I.H.G.S.X.
0.1712.60.98Os04g06512009632.m05427--5e-1At5g08190NF-YB12 (NUCLEAR FACTOR Y, SUBUNIT B12)O.I.H.G.S.X.
0.116.50.99Os01g0277100AK062999.1-Hypothetical protein2e+0At4g14010RALFL32 (ralf-like 32)O.I.H.G.S.X.
0.116.50.98Os01g08454009629.m06194--2e+0At2g17442unknown proteinO.I.H.G.S.X.
0.073.70.98Os01g0190900NM_185202.1-Mutator-like transposase3e-2At1g65730YSL7 (YELLOW STRIPE LIKE 7)O.I.H.G.S.X.
0.073.70.98Os03g0107200NM_187646.1--5e-2At5g46040proton-dependent oligopeptide transport (POT) family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.698.6GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.598.5GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.698.2GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.598.2GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.098.2GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
9.497.9GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.197.9GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.797.8GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.697.8GSM159208Seed (S1, 0 - 2 dap), biological rep 2GSE6893Expression data for reproductive development in riceLink to GEO
7.997.6GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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