CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0110600

Gene name
Homology with Arabidopsis Similar to At5g38300: unknown protein (HF=4e-1)

Module size 6 genes

NF 0.68

%ile 90.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.99 Os06g0110600 NM_185383.1 - - 4e-1 At5g38300 unknown protein O.I. H.G. S.X.
0.67 87.2 0.99 Os07g0590550 9635.m04005 - - 2e+0 At5g48820 ICK6 (INHIBITOR/INTERACTOR WITH CYCLIN-DEPENDENT KINASE) O.I. H.G. S.X.
0.60 79.7 0.99 Os02g0192000 9630.m00904 - - 7e+0 At5g23220 NIC3 (NICOTINAMIDASE 3) O.I. H.G. S.X.
0.55 73.7 0.99 Os03g0141900 9631.m00401 - Hypothetical protein 6e-1 At4g36660 unknown protein O.I. H.G. S.X.
0.55 73.7 0.99 Os01g0627266 9629.m04209 - - 5e+0 At3g21352 unknown protein O.I. H.G. S.X.
0.46 60.9 0.99 Os10g0392050 9638.m02132 - - 4e+0 At3g22110 PAC1 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.6 99.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.9 99.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.5 99.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.3 99.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.0 99.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.1 99.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.2 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.2 98.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.1 98.6 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.0 98.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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