CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0109000

Gene name
Homology with Arabidopsis Similar to At1g35430: unknown protein (HF=2e-1)

Module size 12 genes

NF 0.07

%ile 5.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.61 81.2 0.87 Os06g0109000 AK069941.1 - Phosphoglycerate/bisphosphoglycerate mutase familyprotein 2e-1 At1g35430 unknown protein O.I. H.G. S.X.
0.40 51.1 0.90 Os04g0574700 AK060520.1 - - 2e-2 At1g12480 OZS1 (OZONE-SENSITIVE 1) O.I. H.G. S.X.
0.25 24.1 0.91 Os04g0224000 AK109448.1 - Conserved hypothetical protein 5e-2 At3g44950 glycine-rich protein O.I. H.G. S.X.
0.21 17.9 0.88 Os01g0701900 AK066793.1 - Phosphatidylinositol transfer-like protein III 2e-6 At1g75370 SEC14 cytosolic factor, putative / phosphatidylinositol transfer-like protein, putative O.I. H.G. S.X.
0.20 16.5 0.91 Os11g0459400 AK121073.1 - - 3e-1 At1g75550 glycine-rich protein O.I. H.G. S.X.
0.19 15.1 0.88 Os04g0674100 9632.m05644 - TPR-like domain containing protein 2e-2 At5g54230 MYB49 (myb domain protein 49) O.I. H.G. S.X.
0.15 10.3 0.87 Os01g0948200 9629.m07118 - Scarecrow-like 3 (Fragment) 8e-1 At4g09030 AGP10 (ARABINOGALACTAN PROTEIN 10) O.I. H.G. S.X.
0.11 6.5 0.90 Os05g0457301 9633.m03550 - - 3e+0 At2g40470 LBD15 (LOB DOMAIN-CONTAINING PROTEIN 15) O.I. H.G. S.X.
0.08 4.2 0.92 Os07g0494700 AK064911.1 - Hypothetical protein 5e-1 At1g27760 interferon-related developmental regulator family protein / IFRD protein family O.I. H.G. S.X.
0.03 1.4 0.88 Os07g0434700 AK059240.1 - Peptidase M24, methionine aminopeptidase familyprotein 1e-1 At3g25740 MAP1B (METHIONINE AMINOPEPTIDASE 1C) O.I. H.G. S.X.
0.02 1.0 0.90 Os06g0505900 AK109247.1 - Hypothetical protein 1e+0 At2g01080 - O.I. H.G. S.X.
0.02 1.0 0.88 Os10g0509000 CB676092 - DNA mismatch repair protein MutS, C-terminaldomain containing protein 2e-8 At5g54090 DNA mismatch repair MutS family protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
40.0 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.6 98.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.8 98.6 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
11.8 98.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
9.7 98.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0 97.8 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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