CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0108900

Gene name
Homology with Arabidopsis Similar to At5g41410: BEL1 (BELL 1) (HF=1e-12)

Module size 9 genes

NF 0.63

%ile 85.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.56 76.3 0.91 Os06g0108900 AK101029.1 - Homeobox domain containing protein 1e-12 At5g41410 BEL1 (BELL 1) O.I. H.G. S.X.
0.75 91.9 0.90 Os06g0680500 AK099745.1 - Glutamate receptor 3.1 precursor (Ligand-gated ionchannel 3.1) (AtGLR2) 7e-6 At1g05200 ATGLR3.4 O.I. H.G. S.X.
0.70 88.4 0.90 Os02g0644900 AK066709.1 - Sodium/potassium/calcium exchanger 4 precursor(Na(+)/K(+)/Ca(2+)- exchange protein 4). Splice isoform 2 1e-12 At2g47600 ATMHX (ARABIDOPSIS THALIANA MAGNESIUM/PROTON EXCHANGER) O.I. H.G. S.X.
0.67 87.2 0.89 Os10g0196000 AK068170.1 - Cytochrome P450 family protein 4e+0 At2g40890 CYP98A3 (cytochrome P450, family 98, subfamily A, polypeptide 3) O.I. H.G. S.X.
0.63 82.7 0.90 Os07g0489300 AK060228.1 - UDP-glucuronosyl/UDP-glucosyltransferase familyprotein 3e+0 At2g15320 leucine-rich repeat family protein O.I. H.G. S.X.
0.61 81.2 0.93 Os11g0107400 AK065945.1 - Nodulin-like domain containing protein 1e-9 At5g45275 - O.I. H.G. S.X.
0.60 79.7 0.90 Os10g0190500 AK070455.1 - Protein of unknown function DUF594 family protein 3e-1 At5g06250 transcription factor O.I. H.G. S.X.
0.57 77.0 0.90 Os01g0574700 NM_193609.1 - - 3e-3 At5g01410 RSR4 (REDUCED SUGAR RESPONSE 4) O.I. H.G. S.X.
0.41 52.4 0.91 Os01g0804400 AK070931.1 - Cytochrome P450 family protein 2e-1 At1g34540 CYP94D1 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.0 99.3 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.4 99.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.9 99.0 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.5 98.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.5 98.9 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.3 98.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.3 98.9 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.2 98.8 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.2 98.8 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.4 98.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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