CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os06g0107200

Gene name
Homology with Arabidopsis Similar to At5g48020: unknown protein (HF=3e+0)

Module size 37 genes

NF 0.37

%ile 43.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.98 Os06g0107200 AK108791.1 - Hypothetical protein 3e+0 At5g48020 unknown protein O.I. H.G. S.X.
0.56 76.3 0.99 Os07g0553666 9635.m03641 - - 2e+0 Atmg00600 - O.I. H.G. S.X.
0.55 73.7 0.99 Os06g0587300 AK069419.1 - Conserved hypothetical protein 1e-3 At2g19780 leucine-rich repeat family protein / extensin family protein O.I. H.G. S.X.
0.53 71.3 0.99 Os12g0296700 9640.m01986 - - 9e-3 At3g29070 protein transmembrane transporter O.I. H.G. S.X.
0.52 69.6 0.99 Os04g0398200 9632.m03116 - - 3e+0 At5g02060 integral membrane protein, putative O.I. H.G. S.X.
0.50 68.0 0.99 Os10g0144600 9638.m00459 - - 4e+0 At5g55750 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.49 64.4 0.99 Os07g0142800 NM_186259.1 - - 5e-1 At4g25410 DNA binding / transcription factor O.I. H.G. S.X.
0.48 63.7 0.99 Os01g0335401 9629.m02249 - - 5e-1 At5g16830 SYP21 (SYNTAXIN OF PLANTS 21) O.I. H.G. S.X.
0.47 62.3 0.99 Os07g0234400 CF322815 - - 1e+0 At4g03280 PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C) O.I. H.G. S.X.
0.47 62.3 0.98 Os10g0383000 9632.m01656 - - 5e+0 At4g31875 unknown protein O.I. H.G. S.X.
0.46 60.9 0.99 Os10g0529600 AK107092.1 - Conserved hypothetical protein 1e+0 At5g19880 peroxidase, putative O.I. H.G. S.X.
0.44 58.1 0.99 Os04g0169300 AK120016.1 - Conserved hypothetical protein 8e-1 At1g62790 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein O.I. H.G. S.X.
0.43 55.4 0.99 Os08g0340900 AK068279.1 - PPR repeat containing protein 9e-2 At3g56550 pentatricopeptide (PPR) repeat-containing protein O.I. H.G. S.X.
0.43 55.4 0.99 Os04g0651500 9632.m05428 - Protein kinase domain containing protein 3e-4 At4g31110 kinase O.I. H.G. S.X.
0.39 48.3 0.99 Os02g0216000 9630.m01131 - - 2e-3 At3g47110 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.
0.39 48.3 0.99 Os02g0454401 9630.m02411 - - 3e+0 At2g21210 auxin-responsive protein, putative O.I. H.G. S.X.
0.38 46.9 0.99 Os08g0271700 NM_195274.1 - - 7e-2 At2g18100 unknown protein O.I. H.G. S.X.
0.38 46.9 0.99 Os11g0534400 9639.m03000 - - 3e+0 At4g01935 unknown protein O.I. H.G. S.X.
0.36 44.0 0.99 Os09g0320800 9637.m01243 - - 7e+0 At5g02450 60S ribosomal protein L36 (RPL36C) O.I. H.G. S.X.
0.36 44.0 0.99 Os09g0363400 9637.m01685 - - 5e-3 At2g23320 WRKY15 O.I. H.G. S.X.
0.35 41.7 0.99 Os12g0569850 9640.m03712 - - 9e+0 At4g32570 TIFY8 (TIFY DOMAIN PROTEIN 8) O.I. H.G. S.X.
0.34 40.0 0.99 Os10g0206700 9638.m01230 - - 1e-2 At1g76185 unknown protein O.I. H.G. S.X.
0.34 40.0 0.99 Os01g0977000 NM_189509.1 - - 1e-1 At2g13770 unknown protein O.I. H.G. S.X.
0.34 40.0 0.99 Os06g0605300 9634.m03865 - Hypothetical protein 2e-1 At5g63340 unknown protein O.I. H.G. S.X.
0.34 40.0 0.99 Os02g0216200 AK108648.1 - Hypothetical protein 3e+0 At4g25845 unknown protein O.I. H.G. S.X.
0.33 38.8 0.99 Os09g0429000 9637.m02259 - - 6e+0 At5g43520 DC1 domain-containing protein O.I. H.G. S.X.
0.32 36.3 0.99 Os08g0277700 9636.m01767 - - 4e-2 At4g02160 unknown protein O.I. H.G. S.X.
0.30 32.7 0.99 Os08g0134600 9636.m00328 - - 3e-1 At1g11700 unknown protein O.I. H.G. S.X.
0.30 32.7 0.99 Os02g0792050 9630.m05453 - - 1e+0 At4g33950 OST1 (OPEN STOMATA 1) O.I. H.G. S.X.
0.28 31.1 0.99 Os04g0233800 9632.m01488 - - 2e-1 At2g38600 acid phosphatase class B family protein O.I. H.G. S.X.
0.27 27.5 0.99 Os03g0643100 AK106587.1 - Conserved hypothetical protein 7e-1 At5g54940 eukaryotic translation initiation factor SUI1, putative O.I. H.G. S.X.
0.25 24.1 0.99 Os05g0191200 9633.m00892 - - 5e+0 At5g17795 unknown protein O.I. H.G. S.X.
0.24 22.4 0.99 Os02g0157100 9630.m00554 - Leucine-rich repeat, plant specific containingprotein 4e+0 At5g54220 - O.I. H.G. S.X.
0.22 19.4 0.99 Os05g0203500 AK064593.1 - Conserved hypothetical protein 5e-2 At1g67195 MIR414 (MICRORNA 414) O.I. H.G. S.X.
0.22 19.4 0.99 Os04g0200600 NM_195699.1 - - 1e-1 At1g32240 KAN2 (KANADI 2) O.I. H.G. S.X.
0.21 17.9 0.99 Os05g0300800 9633.m02088 - - 2e-1 At1g23680 unknown protein O.I. H.G. S.X.
0.21 17.9 0.99 Os04g0343900 AK107841.1 - Conserved hypothetical protein 3e-1 At1g18760 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	0.98	Os06g0107200	AK108791.1	-	Hypothetical protein	3e+0	At5g48020	unknown protein	O.I.	H.G.	S.X.
0.56	76.3	0.99	Os07g0553666	9635.m03641	-	-	2e+0	Atmg00600	-	O.I.	H.G.	S.X.
0.55	73.7	0.99	Os06g0587300	AK069419.1	-	Conserved hypothetical protein	1e-3	At2g19780	leucine-rich repeat family protein / extensin family protein	O.I.	H.G.	S.X.
0.53	71.3	0.99	Os12g0296700	9640.m01986	-	-	9e-3	At3g29070	protein transmembrane transporter	O.I.	H.G.	S.X.
0.52	69.6	0.99	Os04g0398200	9632.m03116	-	-	3e+0	At5g02060	integral membrane protein, putative	O.I.	H.G.	S.X.
0.50	68.0	0.99	Os10g0144600	9638.m00459	-	-	4e+0	At5g55750	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.
0.49	64.4	0.99	Os07g0142800	NM_186259.1	-	-	5e-1	At4g25410	DNA binding / transcription factor	O.I.	H.G.	S.X.
0.48	63.7	0.99	Os01g0335401	9629.m02249	-	-	5e-1	At5g16830	SYP21 (SYNTAXIN OF PLANTS 21)	O.I.	H.G.	S.X.
0.47	62.3	0.99	Os07g0234400	CF322815	-	-	1e+0	At4g03280	PETC (PHOTOSYNTHETIC ELECTRON TRANSFER C)	O.I.	H.G.	S.X.
0.47	62.3	0.98	Os10g0383000	9632.m01656	-	-	5e+0	At4g31875	unknown protein	O.I.	H.G.	S.X.
0.46	60.9	0.99	Os10g0529600	AK107092.1	-	Conserved hypothetical protein	1e+0	At5g19880	peroxidase, putative	O.I.	H.G.	S.X.
0.44	58.1	0.99	Os04g0169300	AK120016.1	-	Conserved hypothetical protein	8e-1	At1g62790	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.
0.43	55.4	0.99	Os08g0340900	AK068279.1	-	PPR repeat containing protein	9e-2	At3g56550	pentatricopeptide (PPR) repeat-containing protein	O.I.	H.G.	S.X.
0.43	55.4	0.99	Os04g0651500	9632.m05428	-	Protein kinase domain containing protein	3e-4	At4g31110	kinase	O.I.	H.G.	S.X.
0.39	48.3	0.99	Os02g0216000	9630.m01131	-	-	2e-3	At3g47110	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.
0.39	48.3	0.99	Os02g0454401	9630.m02411	-	-	3e+0	At2g21210	auxin-responsive protein, putative	O.I.	H.G.	S.X.
0.38	46.9	0.99	Os08g0271700	NM_195274.1	-	-	7e-2	At2g18100	unknown protein	O.I.	H.G.	S.X.
0.38	46.9	0.99	Os11g0534400	9639.m03000	-	-	3e+0	At4g01935	unknown protein	O.I.	H.G.	S.X.
0.36	44.0	0.99	Os09g0320800	9637.m01243	-	-	7e+0	At5g02450	60S ribosomal protein L36 (RPL36C)	O.I.	H.G.	S.X.
0.36	44.0	0.99	Os09g0363400	9637.m01685	-	-	5e-3	At2g23320	WRKY15	O.I.	H.G.	S.X.
0.35	41.7	0.99	Os12g0569850	9640.m03712	-	-	9e+0	At4g32570	TIFY8 (TIFY DOMAIN PROTEIN 8)	O.I.	H.G.	S.X.
0.34	40.0	0.99	Os10g0206700	9638.m01230	-	-	1e-2	At1g76185	unknown protein	O.I.	H.G.	S.X.
0.34	40.0	0.99	Os01g0977000	NM_189509.1	-	-	1e-1	At2g13770	unknown protein	O.I.	H.G.	S.X.
0.34	40.0	0.99	Os06g0605300	9634.m03865	-	Hypothetical protein	2e-1	At5g63340	unknown protein	O.I.	H.G.	S.X.
0.34	40.0	0.99	Os02g0216200	AK108648.1	-	Hypothetical protein	3e+0	At4g25845	unknown protein	O.I.	H.G.	S.X.
0.33	38.8	0.99	Os09g0429000	9637.m02259	-	-	6e+0	At5g43520	DC1 domain-containing protein	O.I.	H.G.	S.X.
0.32	36.3	0.99	Os08g0277700	9636.m01767	-	-	4e-2	At4g02160	unknown protein	O.I.	H.G.	S.X.
0.30	32.7	0.99	Os08g0134600	9636.m00328	-	-	3e-1	At1g11700	unknown protein	O.I.	H.G.	S.X.
0.30	32.7	0.99	Os02g0792050	9630.m05453	-	-	1e+0	At4g33950	OST1 (OPEN STOMATA 1)	O.I.	H.G.	S.X.
0.28	31.1	0.99	Os04g0233800	9632.m01488	-	-	2e-1	At2g38600	acid phosphatase class B family protein	O.I.	H.G.	S.X.
0.27	27.5	0.99	Os03g0643100	AK106587.1	-	Conserved hypothetical protein	7e-1	At5g54940	eukaryotic translation initiation factor SUI1, putative	O.I.	H.G.	S.X.
0.25	24.1	0.99	Os05g0191200	9633.m00892	-	-	5e+0	At5g17795	unknown protein	O.I.	H.G.	S.X.
0.24	22.4	0.99	Os02g0157100	9630.m00554	-	Leucine-rich repeat, plant specific containingprotein	4e+0	At5g54220	-	O.I.	H.G.	S.X.
0.22	19.4	0.99	Os05g0203500	AK064593.1	-	Conserved hypothetical protein	5e-2	At1g67195	MIR414 (MICRORNA 414)	O.I.	H.G.	S.X.
0.22	19.4	0.99	Os04g0200600	NM_195699.1	-	-	1e-1	At1g32240	KAN2 (KANADI 2)	O.I.	H.G.	S.X.
0.21	17.9	0.99	Os05g0300800	9633.m02088	-	-	2e-1	At1g23680	unknown protein	O.I.	H.G.	S.X.
0.21	17.9	0.99	Os04g0343900	AK107841.1	-	Conserved hypothetical protein	3e-1	At1g18760	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
36.1 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
22.1 99.3 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.1 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.6 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2 98.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1 98.7 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1 98.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.1 98.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8 98.7 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8 98.7 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
36.1	99.8	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
22.1	99.3	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
17.1	98.8	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.6	98.8	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.2	98.8	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1	98.7	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.1	98.7	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
16.1	98.7	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8	98.7	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.8	98.7	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os06g0107200
Gene name
Homology with Arabidopsis	Similar to At5g48020: unknown protein (HF=3e+0)
Module size	37 genes
NF	0.37
%ile	43.5

Co-expression analysis

Gene ID Os06g0107200 Gene name Homology with ArabidopsisSimilar to At5g48020: unknown protein (HF=3e+0) Module size 37 genes NF 0.37 %ile 43.5

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os06g0107200

Gene name
Homology with Arabidopsis Similar to At5g48020: unknown protein (HF=3e+0)

Module size 37 genes

NF 0.37

%ile 43.5

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays