CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0594900

Gene name
Homology with Arabidopsis Similar to At1g65700: small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative (HF=1e+0)

Module size 6 genes

NF 0.66

%ile 88.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.96 Os05g0594900 AK121070.1 - U6 snRNA-associated Sm-like protein LSm8 1e+0 At1g65700 small nuclear ribonucleoprotein, putative / snRNP, putative / Sm protein, putative O.I. H.G. S.X.
0.67 87.2 0.95 Os08g0412200 AK059631.1 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e+0 At3g46580 MBD5 (METHYL-CPG-BINDING DOMAIN PROTEIN 5) O.I. H.G. S.X.
0.60 79.7 0.97 Os03g0352400 AK105418.1 - Autoantigen NGP-1 3e-50 At1g52980 GTP-binding family protein O.I. H.G. S.X.
0.60 79.7 0.97 Os02g0610600 AK099572.1 - 9G8-like SR protein (RSZp22 splicing factor) 9e-9 At2g24590 splicing factor, putative O.I. H.G. S.X.
0.59 78.0 0.96 Os04g0611300 AK063022.1 - Conserved hypothetical protein 2e+0 At3g47180 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.46 60.9 0.97 Os01g0514000 AK063801.1 - 50S ribosomal protein L24e 1e-10 At2g44860 60S ribosomal protein L24, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.9 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.8 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.100 1 GO:0006397 Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
0.087 1 GO:0008380 The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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