CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0593900

Gene name
Homology with Arabidopsis Similar to At3g20210: DELTA-VPE (HF=5e-2)

Module size 7 genes

NF 0.48

%ile 62.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.87 Os05g0593900 AK058553.1 - C13 endopeptidase NP1 precursor 5e-2 At3g20210 DELTA-VPE O.I. H.G. S.X.
0.63 82.7 0.88 Os12g0454800 AY572461.1 - Histidine kinase 7e-3 At5g10530 lectin protein kinase, putative O.I. H.G. S.X.
0.60 79.7 0.91 Os02g0722400 AK070030.1 - Amino acid transporter c (Fragment) 2e-4 At5g23810 AAP7 O.I. H.G. S.X.
0.55 73.7 0.89 Os01g0740500 9629.m05236 - Transferrin receptor-like dimerisation regiondomain containing protein 2e-5 At3g54720 AMP1 (ALTERED MERISTEM PROGRAM 1) O.I. H.G. S.X.
0.40 51.1 0.89 Os09g0532900 AK106873.1 - Myb, DNA-binding domain containing protein 6e-32 At4g22680 MYB85 (myb domain protein 85) O.I. H.G. S.X.
0.40 51.1 0.89 Os07g0280200 AK108656.1 - AMP-dependent synthetase and ligase domaincontaining protein 2e-2 At5g63380 4-coumarate--CoA ligase family protein / 4-coumaroyl-CoA synthase family protein O.I. H.G. S.X.
0.24 22.4 0.88 Os02g0186900 9630.m00853 - Cytochrome P450 family protein 8e-1 At4g37410 CYP81F4 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
44.2 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.7 98.4 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.5 97.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.9 97.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.7 97.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.6 97.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.2 97.1 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.041 1 GO:0006865 The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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