CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0593000

Gene name
Homology with Arabidopsis Similar to At4g29780: unknown protein (HF=8e-4)

Module size 6 genes

NF 0.34

%ile 37.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 68.0 0.86 Os05g0593000 AK064253.1 - Conserved hypothetical protein 8e-4 At4g29780 unknown protein O.I. H.G. S.X.
0.60 79.7 0.83 Os01g0167400 AB051107.1 - Protein synthesis inhibitor II (EC 3.2.2.22)(Ribosome-inactivating protein II) (rRNA N-glycosidase) 7e-1 At5g59220 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.44 58.1 0.88 Os01g0607200 AK105656.1 - Amino acid permease subfamily protein 1e-21 At2g01170 BAT1 (BIDIRECTIONAL AMINO ACID TRANSPORTER 1) O.I. H.G. S.X.
0.40 51.1 0.84 Os06g0700300 AK099967.1 - Hypothetical protein 7e+0 At5g62770 unknown protein O.I. H.G. S.X.
0.36 44.0 0.87 Os01g0857400 AK103684.1 - Amino acid/polyamine transporter II family protein 1e-9 At1g08230 - O.I. H.G. S.X.
0.13 8.2 0.86 Os05g0205000 AK062320.1 - Multifunctional transport intrinsic membraneprotein 2 6e+0 At5g24610 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.6 99.3 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.5 99.0 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.3 98.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.3 98.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.6 98.6 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.4 98.6 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.133 1 GO:0016042 The chemical reactions and pathways resulting in the breakdown of lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent.
0.091 1 GO:0017148 Any process that stops, prevents or reduces the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA.
0.065 1 GO:0006306 The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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