CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0584900

Gene name
Homology with Arabidopsis Similar to At5g24030: SLAH3 (SLAC1 HOMOLOGUE 3) (HF=5e-3)

Module size 6 genes

NF 0.01

%ile 0.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.95 Os05g0584900 AK105309.1 - Conserved hypothetical protein 5e-3 At5g24030 SLAH3 (SLAC1 HOMOLOGUE 3) O.I. H.G. S.X.
0.15 10.3 0.96 Os11g0426100 9639.m02101 - - 2e-2 At3g29280 unknown protein O.I. H.G. S.X.
0.11 6.5 0.98 Os01g0939700 AK110726.1 - Esterase D (EC 3.1.1.1) 7e-3 At2g41530 SFGH (S-FORMYLGLUTATHIONE HYDROLASE) O.I. H.G. S.X.
0.05 2.5 0.99 Os10g0482500 NM_197048.1 - - 1e+0 At4g38410 dehydrin, putative O.I. H.G. S.X.
0.03 1.4 0.98 Os05g0119900 AU092766 - Conserved hypothetical protein 5e+0 At1g12750 ATRBL6 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 6) O.I. H.G. S.X.
- 0.1 0.96 Os02g0441000 AK108073.1 - Hypothetical protein 2e-2 At3g62090 PIL2 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 2) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.91	98.9	0.95	Os05g0584900	AK105309.1	-	Conserved hypothetical protein	5e-3	At5g24030	SLAH3 (SLAC1 HOMOLOGUE 3)	O.I.	H.G.	S.X.
0.15	10.3	0.96	Os11g0426100	9639.m02101	-	-	2e-2	At3g29280	unknown protein	O.I.	H.G.	S.X.
0.11	6.5	0.98	Os01g0939700	AK110726.1	-	Esterase D (EC 3.1.1.1)	7e-3	At2g41530	SFGH (S-FORMYLGLUTATHIONE HYDROLASE)	O.I.	H.G.	S.X.
0.05	2.5	0.99	Os10g0482500	NM_197048.1	-	-	1e+0	At4g38410	dehydrin, putative	O.I.	H.G.	S.X.
0.03	1.4	0.98	Os05g0119900	AU092766	-	Conserved hypothetical protein	5e+0	At1g12750	ATRBL6 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 6)	O.I.	H.G.	S.X.
-	0.1	0.96	Os02g0441000	AK108073.1	-	Hypothetical protein	2e-2	At3g62090	PIL2 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 2)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
61.0 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
7.3 97.5 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.1 97.4 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.6 97.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5 97.2 GSM377083 Genomic DNA - 45 day old leaf sample - mutant g6989 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3 97.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9 97.0 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.7 96.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
61.0	99.9	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
7.3	97.5	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1	97.4	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
7.1	97.4	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
6.6	97.3	GSM377085	Genomic DNA - 45 day old leaf sample - mutant f2045	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.5	97.2	GSM377083	Genomic DNA - 45 day old leaf sample - mutant g6989	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.3	97.2	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0	97.0	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.9	97.0	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.7	96.9	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, Ptp.3718.1.S1_at, orthologous to the query gene, Os05g0584900

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.68 91.3 Ptp.3718.1.S1_at At5g24030 - - 2e-6 At5g24030 SLAH3 (SLAC1 HOMOLOGUE 3) O.I. H.G. S.X.
0.60 86.0 Ptp.6069.1.S1_a_at At5g24030 GH3 family protein - 2e-7 At2g46370 JAR1 (JASMONATE RESISTANT 1) O.I. H.G. S.X.
0.60 86.0 PtpAffx.157608.1.S1_at At5g24030 - - 3e-1 At1g70270 ATP binding / DNA binding O.I. H.G. S.X.
0.58 84.2 PtpAffx.200207.1.S1_s_at At5g24030 hypothetical protein - 2e-28 At3g24240 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.
0.56 83.9 Ptp.3933.1.S1_at At5g24030 hypothetical protein - 4e-5 At5g35370 ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding O.I. H.G. S.X.
0.55 82.2 PtpAffx.207721.1.S1_at At5g24030 hypothetical protein - 3e-2 At5g06070 RBE (RABBIT EARS) O.I. H.G. S.X.
0.54 80.8 Ptp.5226.1.S1_at At5g24030 hypothetical protein - 1e-13 At1g49480 RTV1 (related to vernalization1 1) O.I. H.G. S.X.
0.52 79.4 PtpAffx.28062.1.S1_at At5g24030 - - 4e-1 At3g28007 nodulin MtN3 family protein O.I. H.G. S.X.
0.50 78.6 Ptp.5711.1.S1_at At5g24030 auxin efflux carrier component - 2e-7 At1g73590 PIN1 (PIN-FORMED 1) O.I. H.G. S.X.
0.46 73.7 PtpAffx.156493.1.S1_at At5g24030 hypothetical protein - 1e-3 At4g32400 SHS1 (SODIUM HYPERSENSITIVE 1) O.I. H.G. S.X.
0.44 71.9 Ptp.7634.1.S1_at At5g24030 - - 1e-32 At2g36890 RAX2 (REGULATOR OF AXILLARY MERISTEMS 2) O.I. H.G. S.X.
0.40 67.0 Ptp.7594.1.S1_at At5g24030 hypothetical protein - 3e-11 At4g37250 leucine-rich repeat family protein / protein kinase family protein O.I. H.G. S.X.
0.39 64.6 PtpAffx.157405.1.S1_at At5g24030 hypothetical protein - 2e-2 At4g09467 - O.I. H.G. S.X.
0.39 64.6 PtpAffx.142862.1.S1_at At5g24030 autoinhibited H+ ATPase /// autoinhibited H+ ATPase - 3e-85 At4g30190 AHA2 O.I. H.G. S.X.
0.35 59.7 Ptp.5347.1.S1_x_at At5g24030 hypothetical protein - 1e-7 At1g02920 GSTF7 O.I. H.G. S.X.
0.32 55.2 PtpAffx.145182.1.S1_at At5g24030 hypothetical protein - 5e-2 At2g38140 PSRP4 (PLASTID-SPECIFIC RIBOSOMAL PROTEIN 4) O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.68	91.3	Ptp.3718.1.S1_at	At5g24030	-	-	2e-6	At5g24030	SLAH3 (SLAC1 HOMOLOGUE 3)	O.I.	H.G.	S.X.
0.60	86.0	Ptp.6069.1.S1_a_at	At5g24030	GH3 family protein	-	2e-7	At2g46370	JAR1 (JASMONATE RESISTANT 1)	O.I.	H.G.	S.X.
0.60	86.0	PtpAffx.157608.1.S1_at	At5g24030	-	-	3e-1	At1g70270	ATP binding / DNA binding	O.I.	H.G.	S.X.
0.58	84.2	PtpAffx.200207.1.S1_s_at	At5g24030	hypothetical protein	-	2e-28	At3g24240	leucine-rich repeat transmembrane protein kinase, putative	O.I.	H.G.	S.X.
0.56	83.9	Ptp.3933.1.S1_at	At5g24030	hypothetical protein	-	4e-5	At5g35370	ATP binding / carbohydrate binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase/ sugar binding	O.I.	H.G.	S.X.
0.55	82.2	PtpAffx.207721.1.S1_at	At5g24030	hypothetical protein	-	3e-2	At5g06070	RBE (RABBIT EARS)	O.I.	H.G.	S.X.
0.54	80.8	Ptp.5226.1.S1_at	At5g24030	hypothetical protein	-	1e-13	At1g49480	RTV1 (related to vernalization1 1)	O.I.	H.G.	S.X.
0.52	79.4	PtpAffx.28062.1.S1_at	At5g24030	-	-	4e-1	At3g28007	nodulin MtN3 family protein	O.I.	H.G.	S.X.
0.50	78.6	Ptp.5711.1.S1_at	At5g24030	auxin efflux carrier component	-	2e-7	At1g73590	PIN1 (PIN-FORMED 1)	O.I.	H.G.	S.X.
0.46	73.7	PtpAffx.156493.1.S1_at	At5g24030	hypothetical protein	-	1e-3	At4g32400	SHS1 (SODIUM HYPERSENSITIVE 1)	O.I.	H.G.	S.X.
0.44	71.9	Ptp.7634.1.S1_at	At5g24030	-	-	1e-32	At2g36890	RAX2 (REGULATOR OF AXILLARY MERISTEMS 2)	O.I.	H.G.	S.X.
0.40	67.0	Ptp.7594.1.S1_at	At5g24030	hypothetical protein	-	3e-11	At4g37250	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.
0.39	64.6	PtpAffx.157405.1.S1_at	At5g24030	hypothetical protein	-	2e-2	At4g09467	-	O.I.	H.G.	S.X.
0.39	64.6	PtpAffx.142862.1.S1_at	At5g24030	autoinhibited H+ ATPase /// autoinhibited H+ ATPase	-	3e-85	At4g30190	AHA2	O.I.	H.G.	S.X.
0.35	59.7	Ptp.5347.1.S1_x_at	At5g24030	hypothetical protein	-	1e-7	At1g02920	GSTF7	O.I.	H.G.	S.X.
0.32	55.2	PtpAffx.145182.1.S1_at	At5g24030	hypothetical protein	-	5e-2	At2g38140	PSRP4 (PLASTID-SPECIFIC RIBOSOMAL PROTEIN 4)	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os05g0584900
Gene name
Homology with Arabidopsis	Similar to At5g24030: SLAH3 (SLAC1 HOMOLOGUE 3) (HF=5e-3)
Module size	6 genes
NF	0.01
%ile	0.8

Co-expression analysis

Gene ID Os05g0584900 Gene name Homology with ArabidopsisSimilar to At5g24030: SLAH3 (SLAC1 HOMOLOGUE 3) (HF=5e-3) Module size 6 genes NF 0.01 %ile 0.8

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgareTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os05g0584900

Gene name
Homology with Arabidopsis Similar to At5g24030: SLAH3 (SLAC1 HOMOLOGUE 3) (HF=5e-3)

Module size 6 genes

NF 0.01

%ile 0.8

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays