CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0584400

Gene name
Homology with Arabidopsis Similar to At5g55570: unknown protein (HF=2e+0)

Module size 6 genes

NF 0.34

%ile 37.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.47 62.3 0.93 Os05g0584400 AK106631.1 - Conserved hypothetical protein 2e+0 At5g55570 unknown protein O.I. H.G. S.X.
0.50 68.0 0.94 Os03g0727800 AK109453.1 - Cyclin-like F-box domain containing protein 3e+0 At3g52540 OFP18 (OVATE FAMILY PROTEIN 18) O.I. H.G. S.X.
0.30 32.7 0.95 Os07g0406800 AK101812.1 - Eukaryotic-type DNA primase, large subunit familyprotein 2e-5 At1g67320 DNA primase, large subunit family O.I. H.G. S.X.
0.27 27.5 0.94 Os01g0302500 AB028883.1 - Knotted1-type homeobox protein OSH6 4e-2 At1g70510 KNAT2 (KNOTTED-LIKE FROM ARABIDOPSIS THALIANA 2) O.I. H.G. S.X.
0.26 25.6 0.95 Os02g0762200 AK103885.1 - Zn-finger, CCHC type domain containing protein 2e-1 At3g02910 - O.I. H.G. S.X.
0.18 13.7 0.94 Os03g0591300 AK101749.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 9e-1 At4g30662 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.5 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.9 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.8 98.1 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.4 98.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.2 98.0 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.013 1 GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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