CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0583550

Gene name
Homology with Arabidopsis Similar to At1g47490: ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C) (HF=7e-1)

Module size 6 genes

NF 0.26

%ile 25.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.48 63.7 0.98 Os05g0583550 NM_191268.1 - - 7e-1 At1g47490 ATRBP47C (ARABIDOPSIS THALIANA RNA-BINDING PROTEIN 47C) O.I. H.G. S.X.
0.38 46.9 0.98 Os01g0148300 NM_184360.1 - - 1e-1 At5g62210 embryo-specific protein-related O.I. H.G. S.X.
0.25 24.1 0.98 Os11g0520201 9639.m02910 - - 8e-2 At2g35960 NHL12 O.I. H.G. S.X.
0.25 24.1 0.98 Os04g0549800 9632.m04471 - - 4e-10 At2g25820 transcription factor O.I. H.G. S.X.
0.21 17.9 0.98 Os03g0312200 9631.m01964 - - 2e-1 At5g24316 proline-rich family protein O.I. H.G. S.X.
0.15 10.3 0.98 Os04g0510000 AK109180.1 - Hypothetical protein 1e+0 At2g23310 ATRER1C1 O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
47.8 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.0 98.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.2 98.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.4 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.7 97.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.5 97.7 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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