CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0582300

Gene name
Homology with Arabidopsis Similar to At1g17050: SPS2 (Solanesyl diphosphate synthase 2) (HF=2e-17)

Module size 6 genes

NF 0.63

%ile 86.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.44 58.1 0.95 Os05g0582300 AK101790.1 - Solanesyl diphosphate synthase 2e-17 At1g17050 SPS2 (Solanesyl diphosphate synthase 2) O.I. H.G. S.X.
0.83 95.8 0.96 Os08g0432500 AK106170.1 - ATP-dependent Clp protease adaptor protein ClpSfamily protein 3e-2 At3g61678 unknown protein O.I. H.G. S.X.
0.80 94.6 0.97 Os03g0744700 AK071178.1 - Conserved hypothetical protein 4e-2 At1g62250 unknown protein O.I. H.G. S.X.
0.73 91.1 0.96 Os11g0603200 AK059060.1 - ABCF-type protein 1e-19 At5g64840 ATGCN5 (A. THALIANA GENERAL CONTROL NON-REPRESSIBLE 5) O.I. H.G. S.X.
0.57 77.0 0.96 Os04g0657300 CB624212 - Farnesyl pyrophosphate synthetase 2 (FPPsynthetase 2) (FPS 2) (Farnesyl diphosphate synthetase 2)[Includes: Dimethylallyltranstransferase (EC 2.5.1.1) 2e-1 At1g68552 CPuORF53 (Conserved peptide upstream open reading frame 53) O.I. H.G. S.X.
0.44 58.1 0.96 Os07g0656700 AU173917 - Protein of unknown function DUF1334 family protein 4e-11 At5g13720 - O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
36.3 99.8 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
33.4 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
20.4 99.1 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.0 98.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8 97.8 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.125 1 GO:0008299 The chemical reactions and pathways resulting in the formation of any isoprenoid compound, isoprene (2-methylbuta-1,3-diene) or compounds containing or derived from linked isoprene (3-methyl-2-butenylene) residues.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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