Co-expression analysis

Gene ID Os05g0578600
Gene name
Homology with ArabidopsisSimilar to At1g10640: polygalacturonase (HF=1e-6)
Module size 6 genes
NF 0.50
%ile 66.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5068.00.89Os05g05786009633.m04728-Polygalacturonase PG21e-6At1g10640polygalacturonaseO.I.H.G.S.X.
0.6787.20.90Os02g0161800AK105544.1-Peroxidase precursor (EC 1.11.1.7)7e-1At1g48750protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.5371.30.90Os08g0546900AU197913-NC domain containing protein4e+0At5g59490haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.4458.10.90Os08g0550500AK058423.1-Conserved hypothetical protein4e+0At5g41440zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.4051.10.90Os11g0462100AK102820.1-Glycoside hydrolase, family 18 protein8e-1At3g01010UDP-glucose/GDP-mannose dehydrogenase family proteinO.I.H.G.S.X.
0.3338.80.93Os02g0831500AK061268.1-Sucrose synthase (EC 2.4.1.13) (Sucrose-UDPglucosyltransferase) (Fragment)3e+0At5g20830SUS1 (SUCROSE SYNTHASE 1)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
48.099.9GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
19.599.1GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
15.598.7GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
13.398.4GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.998.4GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.198.3GSM154938Root_tZ-treatment_30min_replicate 3GSE6719Cytokinin responsive genes in riceLink to GEO
10.898.1GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.798.1GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.698.1GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.498.1GSM154942Root_tZ-treatment_120min_replicate 1GSE6719Cytokinin responsive genes in riceLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2501GO:0005985The chemical reactions and pathways involving sucrose, the disaccharide fructofuranosyl-glucopyranoside.Link to AmiGO
0.0221GO:0006979A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.Link to AmiGO
0.0151GO:0009058The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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