CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0577700

Gene name
Homology with Arabidopsis Similar to At3g01490: protein kinase, putative (HF=1e-27)

Module size 32 genes

NF 0.20

%ile 18.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.97 99.9 0.90 Os05g0577700 AK107217.1 - Protein kinase 1e-27 At3g01490 protein kinase, putative O.I. H.G. S.X.
0.43 55.4 0.95 Os04g0610000 AK060380.1 - Conserved hypothetical protein 1e+0 At5g10330 HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1) O.I. H.G. S.X.
0.42 53.9 0.95 Os03g0187100 AK060541.1 - Hypothetical protein 1e+0 At2g40316 unknown protein O.I. H.G. S.X.
0.33 38.8 0.94 Os06g0298400 AK066952.1 - WW/Rsp5/WWP domain containing protein 4e-7 At3g13225 protein binding O.I. H.G. S.X.
0.30 32.7 0.96 Os03g0802300 AK120564.1 - Hypothetical protein 3e-1 At5g61270 PIF7 (PHYTOCHROME-INTERACTING FACTOR7) O.I. H.G. S.X.
0.29 31.1 0.93 Os05g0533900 AK106477.1 - - 3e-3 At1g33360 ATP-dependent Clp protease ATP-binding subunit ClpX, putative O.I. H.G. S.X.
0.28 31.1 0.95 Os03g0138100 CB618243 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 1e-1 At2g33440 splicing factor family protein O.I. H.G. S.X.
0.27 27.5 0.94 Os02g0193500 AK101237.1 - Hypothetical protein 3e+0 At1g58242 unknown protein O.I. H.G. S.X.
0.26 25.6 0.96 Os05g0188600 AK111527.1 - Hypothetical protein 5e-1 At2g30010 - O.I. H.G. S.X.
0.26 25.6 0.96 Os03g0802800 AK059670.1 - Hypothetical protein 3e+0 At5g18540 unknown protein O.I. H.G. S.X.
0.25 24.1 0.93 Os08g0485700 AK069097.1 - Zn-finger, C2H2 type domain containing protein 2e+0 At5g58490 cinnamoyl-CoA reductase family O.I. H.G. S.X.
0.25 24.1 0.94 Os01g0267100 AK065023.1 - MT-A70 family protein 1e-17 At4g09980 EMB1691 (EMBRYO DEFECTIVE 1691) O.I. H.G. S.X.
0.25 24.1 0.96 Os07g0636200 AK069020.1 - SNF2-related domain containing protein 5e-40 At1g48310 CHR18 O.I. H.G. S.X.
0.23 21.2 0.95 Os03g0143600 AK068424.1 - Inhibitor of growth protein 1. Splice isoform 2 8e-16 At3g24010 ING1 (INHIBITOR OF GROWTH 1) O.I. H.G. S.X.
0.21 17.9 0.96 Os03g0100400 AK121880.1 - Repair endonuclease (Single stranded DNAendonuclease RAD1) 2e-9 At5g41150 UVH1 (ULTRAVIOLET HYPERSENSITIVE 1) O.I. H.G. S.X.
0.21 17.9 0.94 Os07g0227400 AK069634.1 - RNA binding/signal transduction protein QkI-4 3e-9 At3g08620 KH domain-containing protein O.I. H.G. S.X.
0.21 17.9 0.95 Os11g0292000 CR278506 - Zn-finger-like, PHD finger domain containingprotein 6e-1 At4g22080 pectate lyase family protein O.I. H.G. S.X.
0.21 17.9 0.95 Os08g0499900 AK099866.1 - Leucine-rich repeat, cysteine-containing subtypecontaining protein 1e+0 At5g12210 geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative O.I. H.G. S.X.
0.21 17.9 0.95 Os07g0264900 AK071462.1 - Hypothetical protein 2e+0 At2g46670 pseudo-response regulator, putative / timing of CAB expression 1-like protein, putative O.I. H.G. S.X.
0.19 15.1 0.96 Os02g0147800 AK106225.1 - Homeo protein (Fragment) 3e-1 At5g07600 oleosin / glycine-rich protein O.I. H.G. S.X.
0.18 13.7 0.96 Os08g0290100 AK073404.1 - Conserved hypothetical protein 4e+0 At5g54640 RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5) O.I. H.G. S.X.
0.18 13.7 0.93 Os12g0556600 AK063965.1 - CTP synthase family protein 4e-25 At4g02120 CTP synthase, putative / UTP--ammonia ligase, putative O.I. H.G. S.X.
0.17 12.6 0.95 Os03g0423800 AK069431.1 - Conserved hypothetical protein 3e-1 At2g03070 unknown protein O.I. H.G. S.X.
0.15 10.3 0.96 Os01g0737800 AK073299.1 - Protein farnesyltransferase beta subunit (EC2.5.1.58) (CAAX farnesyltransferase beta subunit) (RASproteins prenyltransferase beta) (FTase-beta) 1e-5 At5g40280 ERA1 (ENHANCED RESPONSE TO ABA 1) O.I. H.G. S.X.
0.15 10.3 0.96 Os01g0500500 NM_193690.1 - Protein of unknown function DUF632 domaincontaining protein 3e-4 At1g52320 unknown protein O.I. H.G. S.X.
0.14 9.3 0.96 Os07g0205200 AK111572.1 - Transcription initiation factor TFIID subunit 5(Transcription initiation factor TFIID 100 kDa subunit)(TAF(II)100) (TAFII-100) (TAFII100). Splice isoform Short 2e-34 At5g25150 TAF5 (TBP-ASSOCIATED FACTOR 5) O.I. H.G. S.X.
0.12 7.2 0.91 Os10g0169800 AK067281.1 - Alpha/beta hydrolase fold domain containingprotein 7e-32 At4g12230 esterase/lipase/thioesterase family protein O.I. H.G. S.X.
0.12 7.2 0.95 Os06g0632700 AK101148.1 - Octicosapeptide/Phox/Bem1p domain containingprotein 4e-1 At1g50700 CPK33 O.I. H.G. S.X.
0.11 6.5 0.95 Os05g0207900 AK068570.1 - Peptidase C48, SUMO/Sentrin/Ubl1 family protein 4e-10 At1g09730 Ulp1 protease family protein O.I. H.G. S.X.
0.10 5.7 0.94 Os08g0328300 AK105392.1 - ENT domain containing protein 1e-9 At5g13020 emsy N terminus domain-containing protein / ENT domain-containing protein O.I. H.G. S.X.
0.09 4.9 0.94 Os01g0238900 AK111838.1 - WD40-like domain containing protein 2e-20 At4g28450 nucleotide binding / protein binding O.I. H.G. S.X.
0.09 4.9 0.95 Os06g0649500 AK072591.1 - WD40 associated region in TFIID subunit domaincontaining protein 1e-58 At5g25150 TAF5 (TBP-ASSOCIATED FACTOR 5) O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.97	99.9	0.90	Os05g0577700	AK107217.1	-	Protein kinase	1e-27	At3g01490	protein kinase, putative	O.I.	H.G.	S.X.
0.43	55.4	0.95	Os04g0610000	AK060380.1	-	Conserved hypothetical protein	1e+0	At5g10330	HPA1 (HISTIDINOL PHOSPHATE AMINOTRANSFERASE 1)	O.I.	H.G.	S.X.
0.42	53.9	0.95	Os03g0187100	AK060541.1	-	Hypothetical protein	1e+0	At2g40316	unknown protein	O.I.	H.G.	S.X.
0.33	38.8	0.94	Os06g0298400	AK066952.1	-	WW/Rsp5/WWP domain containing protein	4e-7	At3g13225	protein binding	O.I.	H.G.	S.X.
0.30	32.7	0.96	Os03g0802300	AK120564.1	-	Hypothetical protein	3e-1	At5g61270	PIF7 (PHYTOCHROME-INTERACTING FACTOR7)	O.I.	H.G.	S.X.
0.29	31.1	0.93	Os05g0533900	AK106477.1	-	-	3e-3	At1g33360	ATP-dependent Clp protease ATP-binding subunit ClpX, putative	O.I.	H.G.	S.X.
0.28	31.1	0.95	Os03g0138100	CB618243	-	RNA-binding region RNP-1 (RNA recognition motif)domain containing protein	1e-1	At2g33440	splicing factor family protein	O.I.	H.G.	S.X.
0.27	27.5	0.94	Os02g0193500	AK101237.1	-	Hypothetical protein	3e+0	At1g58242	unknown protein	O.I.	H.G.	S.X.
0.26	25.6	0.96	Os05g0188600	AK111527.1	-	Hypothetical protein	5e-1	At2g30010	-	O.I.	H.G.	S.X.
0.26	25.6	0.96	Os03g0802800	AK059670.1	-	Hypothetical protein	3e+0	At5g18540	unknown protein	O.I.	H.G.	S.X.
0.25	24.1	0.93	Os08g0485700	AK069097.1	-	Zn-finger, C2H2 type domain containing protein	2e+0	At5g58490	cinnamoyl-CoA reductase family	O.I.	H.G.	S.X.
0.25	24.1	0.94	Os01g0267100	AK065023.1	-	MT-A70 family protein	1e-17	At4g09980	EMB1691 (EMBRYO DEFECTIVE 1691)	O.I.	H.G.	S.X.
0.25	24.1	0.96	Os07g0636200	AK069020.1	-	SNF2-related domain containing protein	5e-40	At1g48310	CHR18	O.I.	H.G.	S.X.
0.23	21.2	0.95	Os03g0143600	AK068424.1	-	Inhibitor of growth protein 1. Splice isoform 2	8e-16	At3g24010	ING1 (INHIBITOR OF GROWTH 1)	O.I.	H.G.	S.X.
0.21	17.9	0.96	Os03g0100400	AK121880.1	-	Repair endonuclease (Single stranded DNAendonuclease RAD1)	2e-9	At5g41150	UVH1 (ULTRAVIOLET HYPERSENSITIVE 1)	O.I.	H.G.	S.X.
0.21	17.9	0.94	Os07g0227400	AK069634.1	-	RNA binding/signal transduction protein QkI-4	3e-9	At3g08620	KH domain-containing protein	O.I.	H.G.	S.X.
0.21	17.9	0.95	Os11g0292000	CR278506	-	Zn-finger-like, PHD finger domain containingprotein	6e-1	At4g22080	pectate lyase family protein	O.I.	H.G.	S.X.
0.21	17.9	0.95	Os08g0499900	AK099866.1	-	Leucine-rich repeat, cysteine-containing subtypecontaining protein	1e+0	At5g12210	geranylgeranyl transferase type II beta subunit, putative / RAB geranylgeranyltransferase beta subunit, putative	O.I.	H.G.	S.X.
0.21	17.9	0.95	Os07g0264900	AK071462.1	-	Hypothetical protein	2e+0	At2g46670	pseudo-response regulator, putative / timing of CAB expression 1-like protein, putative	O.I.	H.G.	S.X.
0.19	15.1	0.96	Os02g0147800	AK106225.1	-	Homeo protein (Fragment)	3e-1	At5g07600	oleosin / glycine-rich protein	O.I.	H.G.	S.X.
0.18	13.7	0.96	Os08g0290100	AK073404.1	-	Conserved hypothetical protein	4e+0	At5g54640	RAT5 (RESISTANT TO AGROBACTERIUM TRANSFORMATION 5)	O.I.	H.G.	S.X.
0.18	13.7	0.93	Os12g0556600	AK063965.1	-	CTP synthase family protein	4e-25	At4g02120	CTP synthase, putative / UTP--ammonia ligase, putative	O.I.	H.G.	S.X.
0.17	12.6	0.95	Os03g0423800	AK069431.1	-	Conserved hypothetical protein	3e-1	At2g03070	unknown protein	O.I.	H.G.	S.X.
0.15	10.3	0.96	Os01g0737800	AK073299.1	-	Protein farnesyltransferase beta subunit (EC2.5.1.58) (CAAX farnesyltransferase beta subunit) (RASproteins prenyltransferase beta) (FTase-beta)	1e-5	At5g40280	ERA1 (ENHANCED RESPONSE TO ABA 1)	O.I.	H.G.	S.X.
0.15	10.3	0.96	Os01g0500500	NM_193690.1	-	Protein of unknown function DUF632 domaincontaining protein	3e-4	At1g52320	unknown protein	O.I.	H.G.	S.X.
0.14	9.3	0.96	Os07g0205200	AK111572.1	-	Transcription initiation factor TFIID subunit 5(Transcription initiation factor TFIID 100 kDa subunit)(TAF(II)100) (TAFII-100) (TAFII100). Splice isoform Short	2e-34	At5g25150	TAF5 (TBP-ASSOCIATED FACTOR 5)	O.I.	H.G.	S.X.
0.12	7.2	0.91	Os10g0169800	AK067281.1	-	Alpha/beta hydrolase fold domain containingprotein	7e-32	At4g12230	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.
0.12	7.2	0.95	Os06g0632700	AK101148.1	-	Octicosapeptide/Phox/Bem1p domain containingprotein	4e-1	At1g50700	CPK33	O.I.	H.G.	S.X.
0.11	6.5	0.95	Os05g0207900	AK068570.1	-	Peptidase C48, SUMO/Sentrin/Ubl1 family protein	4e-10	At1g09730	Ulp1 protease family protein	O.I.	H.G.	S.X.
0.10	5.7	0.94	Os08g0328300	AK105392.1	-	ENT domain containing protein	1e-9	At5g13020	emsy N terminus domain-containing protein / ENT domain-containing protein	O.I.	H.G.	S.X.
0.09	4.9	0.94	Os01g0238900	AK111838.1	-	WD40-like domain containing protein	2e-20	At4g28450	nucleotide binding / protein binding	O.I.	H.G.	S.X.
0.09	4.9	0.95	Os06g0649500	AK072591.1	-	WD40 associated region in TFIID subunit domaincontaining protein	1e-58	At5g25150	TAF5 (TBP-ASSOCIATED FACTOR 5)	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.2 98.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.5 98.6 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.2 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6 97.9 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5 97.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4 97.9 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3 97.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1 97.9 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
17.2	98.8	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
14.5	98.6	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
11.2	98.2	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.6	97.9	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.5	97.9	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.4	97.9	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3	97.9	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.3	97.9	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2	97.9	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.1	97.9	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.021 1 GO:0015031 The directed movement of proteins into, out of, within or between cells.
0.011 1 GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.021	1	GO:0015031	The directed movement of proteins into, out of, within or between cells.
0.011	1	GO:0045449	Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

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Gene ID	Os05g0577700
Gene name
Homology with Arabidopsis	Similar to At3g01490: protein kinase, putative (HF=1e-27)
Module size	32 genes
NF	0.20
%ile	18.2

Co-expression analysis

Gene ID Os05g0577700 Gene name Homology with ArabidopsisSimilar to At3g01490: protein kinase, putative (HF=1e-27) Module size 32 genes NF 0.20 %ile 18.2

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO0.0211GO:0015031The directed movement of proteins into, out of, within or between cells.0.0111GO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os05g0577700

Gene name
Homology with Arabidopsis Similar to At3g01490: protein kinase, putative (HF=1e-27)

Module size 32 genes

NF 0.20

%ile 18.2

SF Genes GO ID Process Name Link to AmiGO
0.021 1 GO:0015031 The directed movement of proteins into, out of, within or between cells.
0.011 1 GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays