CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0576850

Gene name
Homology with Arabidopsis Similar to At2g40510: 40S ribosomal protein S26 (RPS26A) (HF=1e-1)

Module size 7 genes

NF 0.76

%ile 96.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.53 71.3 0.98 Os05g0576850 9633.m04714 - - 1e-1 At2g40510 40S ribosomal protein S26 (RPS26A) O.I. H.G. S.X.
0.86 96.4 0.98 Os08g0526201 9636.m04208 - - 8e-1 At2g17710 unknown protein O.I. H.G. S.X.
0.83 95.8 0.99 Os02g0491800 9630.m02768 - Germin-like protein 3 (Fragment) 6e-6 At3g04200 germin-like protein, putative O.I. H.G. S.X.
0.80 94.6 0.98 Os02g0237200 9630.m01320 - - 6e+0 At3g11745 unknown protein O.I. H.G. S.X.
0.71 89.6 0.98 Os04g0552900 9632.m04500 - - 3e-1 At4g30410 transcription factor O.I. H.G. S.X.
0.67 87.2 0.98 Os12g0584500 9640.m03852 - - 3e+1 At5g28730 unknown protein O.I. H.G. S.X.
0.67 87.2 0.99 Os04g0196800 9632.m01077 - - 2e+0 At5g17470 calmodulin-related protein, putative O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
42.9 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
41.6 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.7 99.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.6 98.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.6 98.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0 98.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9 98.1 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.6 98.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage