Co-expression analysis

Gene ID Os05g0573300
Gene name
Homology with ArabidopsisSimilar to At3g12670: emb2742 (embryo defective 2742) (HF=1e-37)
Module size 6 genes
NF 0.58
%ile 78.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6787.20.90Os05g0573300AK070411.1-CTP synthase family protein1e-37At3g12670emb2742 (embryo defective 2742)O.I.H.G.S.X.
0.6787.20.91Os01g0860800AK070331.1-Glycoside hydrolase, family 17 protein3e-2At5g42100ATBG_PAPO.I.H.G.S.X.
0.5573.70.92Os04g0671200AK106044.1-Flavin-containing amine oxidase family protein1e+0At2g43020ATPAO2 (Polyamine oxidase 2)O.I.H.G.S.X.
0.5068.00.93Os07g0622000AB125303.1-Abscisic acid-inducible protein kinase (EC2.7.1.-) (Fragment)1e-39At4g33950OST1 (OPEN STOMATA 1)O.I.H.G.S.X.
0.4660.90.93Os10g0574700CB630449-Protein of unknown function DUF597 family protein4e-2At4g17900zinc-binding family proteinO.I.H.G.S.X.
0.4253.90.90Os01g0900800AK068254.1-Basic helix-loop-helix dimerisation region bHLHdomain containing protein4e-18At2g43140DNA binding / transcription factorO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
44.099.9GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
25.099.5GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
19.799.1GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
19.199.0GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
18.098.9GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
17.298.8GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
17.198.8GSM377078Genomic DNA - 45 day old leaf sample - mutant g6603GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
16.598.8GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
16.098.7GSM377074Genomic DNA - 45 day old leaf sample - mutant g282GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.698.7GSM377086Genomic DNA - 45 day old leaf sample - IR64 wtcheckGSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0131GO:0045449Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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