CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0569500

Gene name
Homology with Arabidopsis Similar to At1g05510: - (HF=6e-10)

Module size 6 genes

NF 0.85

%ile 99.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.97 Os05g0569500 AF049892.1 - - 6e-10 At1g05510 - O.I. H.G. S.X.
0.83 95.8 0.97 Os05g0140800 AK110652.1 - Glucose/ribitol dehydrogenase family protein 7e-1 At3g05260 short-chain dehydrogenase/reductase (SDR) family protein O.I. H.G. S.X.
0.83 95.8 0.97 Os03g0277500 AK063650.1 - Glyoxalase/bleomycin resistanceprotein/dioxygenase domain containing protein 2e+1 At4g38260 unknown protein O.I. H.G. S.X.
0.73 91.1 0.97 Os01g0702500 AY333185.1 - Dehydrin RAB25 3e-5 At3g50980 XERO1 (DEHYDRIN XERO 1) O.I. H.G. S.X.
0.73 91.1 0.97 Os04g0510900 AK063625.1 - Embryo-specific protein 1 (ATS1) 9e+0 At1g23240 caleosin-related family protein O.I. H.G. S.X.
0.60 79.7 0.97 Os03g0159600 AK106743.1 - Rab28 protein 1e+1 At3g14200 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.5 98.7 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.7 98.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.5 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1 98.0 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.0 98.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.8 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.211846.1.S1_at, orthologous to the query gene, Os05g0569500

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.50 78.6 PtpAffx.211846.1.S1_at At1g05510 hypothetical protein - 8e-1 At1g74870 protein binding / zinc ion binding O.I. H.G. S.X.
0.06 9.8 PtpAffx.31076.1.A1_at At1g05510 - - 4e+0 At5g64460 - O.I. H.G. S.X.
0.05 8.3 PtpAffx.93266.1.A1_at At1g05510 hypothetical protein - 7e-24 At3g18740 60S ribosomal protein L30 (RPL30C) O.I. H.G. S.X.
0.04 6.9 Ptp.1927.1.A1_at At1g05510 - - 4e+0 At3g61190 BAP1 (BON ASSOCIATION PROTEIN 1) O.I. H.G. S.X.
0.03 5.2 PtpAffx.211445.1.S1_s_at At1g05510 hypothetical protein - 4e+0 At5g56760 ATSERAT1 O.I. H.G. S.X.
0.03 5.2 PtpAffx.849.5.A1_at At1g05510 hypothetical protein - 2e-42 At3g23390 60S ribosomal protein L36a/L44 (RPL36aA) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Triticum_aestivum
Vitis_vinifera
Zea_mays

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