CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0569000

Gene name
Homology with Arabidopsis Similar to At3g30350: unknown protein (HF=7e-1)

Module size 6 genes

NF 0.31

%ile 34.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.63 82.7 0.98 Os05g0569000 9633.m04629 - - 7e-1 At3g30350 unknown protein O.I. H.G. S.X.
0.50 68.0 0.98 Os01g0973200 NM_189477.1 - Conserved hypothetical protein 3e-3 At2g35960 NHL12 O.I. H.G. S.X.
0.31 34.5 0.98 Os03g0220300 AK064657.1 - Hypothetical protein 6e-2 At1g61160 - O.I. H.G. S.X.
0.31 34.5 0.98 Os07g0555400 AK070977.1 - Hypothetical protein 9e-1 At3g11550 integral membrane family protein O.I. H.G. S.X.
0.17 12.6 0.98 Os07g0472100 9635.m02811 - - 2e+0 At3g49305 - O.I. H.G. S.X.
0.13 8.2 0.98 Os02g0617500 AK106578.1 - The stop codon is not identified. 3e-13 At3g27730 RCK (ROCK-N-ROLLERS) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
21.2 99.2 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.3 98.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.1 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2 98.2 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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