CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0558400

Gene name
Homology with Arabidopsis Similar to At5g65780: ATBCAT-5 (HF=5e-24)

Module size 6 genes

NF 0.23

%ile 21.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.95 Os05g0558400 AK072756.1 - Branched-chain-amino-acid aminotransferase 3,chloroplast precursor (EC 2.6.1.42) (Atbcat-3) 5e-24 At5g65780 ATBCAT-5 O.I. H.G. S.X.
0.31 34.5 0.97 Os04g0564600 AK120614.1 - HMG1 protein 4e-1 At4g33310 unknown protein O.I. H.G. S.X.
0.29 31.1 0.97 Os08g0547000 CR279882 - RNA-binding region RNP-1 (RNA recognition motif)domain containing protein 2e+0 At1g16810 unknown protein O.I. H.G. S.X.
0.25 24.1 0.96 Os07g0587400 AK103740.1 - Eukaryotic peptide chain release factor subunit1-3 (eRF1-3) (Eukaryotic release factor 1-3) (Omnipotentsuppressor protein 1 homolog 3) (SUP1 homolog 3) 4e-145 At1g12920 ERF1-2 (EUKARYOTIC RELEASE FACTOR 1-2) O.I. H.G. S.X.
0.14 9.3 0.97 Os05g0564200 AK070198.1 - U2 snRNP auxiliary factor, small subunit 2e-22 At1g27650 ATU2AF35A O.I. H.G. S.X.
0.10 5.7 0.97 Os02g0199900 AB033536.1 - 26S proteasome regulatory complex subunit p42D 2e-91 At5g43010 RPT4A O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
24.9 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.7 98.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.4 98.7 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.0 98.0 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.6 97.8 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.4 97.7 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.3 97.7 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.222 1 GO:0009081 The chemical reactions and pathways involving amino acids containing a branched carbon skeleton, comprising isoleucine, leucine and valine.
0.154 1 GO:0006415 The process resulting in the release of a polypeptide chain from the ribosome, usually in response to a termination codon (UAA, UAG, or UGA in the universal genetic code).

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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