CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0557600

Gene name
Homology with Arabidopsis Similar to At3g15355: UBC25 (UBIQUITIN-CONJUGATING ENZYME 25) (HF=3e-4)

Module size 7 genes

NF 0.52

%ile 69.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.77 93.1 0.94 Os05g0557600 AK121717.1 - Ubiquitin-conjugating enzymes domain containingprotein 3e-4 At3g15355 UBC25 (UBIQUITIN-CONJUGATING ENZYME 25) O.I. H.G. S.X.
0.60 79.7 0.95 Os09g0119100 AK102931.1 - Conserved hypothetical protein 1e-2 At2g28810 Dof-type zinc finger domain-containing protein O.I. H.G. S.X.
0.57 77.0 0.93 Os08g0484600 D82038.1 - OSK4 1e-52 At3g01090 AKIN10 (Arabidopsis SNF1 kinase homolog 10) O.I. H.G. S.X.
0.55 73.7 0.96 Os01g0932600 AK072340.1 - BTB/POZ domain containing protein 5e-22 At4g15840 protein binding O.I. H.G. S.X.
0.40 51.1 0.94 Os01g0672300 AK107129.1 - Hypothetical protein 2e-1 At1g72080 unknown protein O.I. H.G. S.X.
0.33 38.8 0.95 Os02g0274000 AK099750.1 - Conserved hypothetical protein 5e-3 At1g62240 unknown protein O.I. H.G. S.X.
0.27 27.5 0.94 Os04g0670800 AK073170.1 - The start codon is not identified. 2e-4 At1g14570 UBX domain-containing protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
26.2 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.1 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.045 1 GO:0016579 The removal of one or more ubiquitin moieties from a protein.
0.034 1 GO:0006464 The covalent alteration of one or more amino acids occurring in proteins, peptides and nascent polypeptides (co-translational, post-translational modifications). Includes the modification of charged tRNAs that are destined to occur in a protein (pre-translation modification).

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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