CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0552600

Gene name
Homology with Arabidopsis Similar to At5g48170: SLY2 (SLEEPY2) (HF=5e-1)

Module size 7 genes

NF 0.15

%ile 12.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.92 99.1 0.95 Os05g0552600 9633.m04465 - Extensin-like region family protein 5e-1 At5g48170 SLY2 (SLEEPY2) O.I. H.G. S.X.
0.67 87.2 0.94 Os11g0655500 9639.m04020 - - 6e-3 At5g03380 heavy-metal-associated domain-containing protein O.I. H.G. S.X.
0.32 36.3 0.97 Os01g0249700 9629.m01451 - - 9e-1 At4g18692 unknown protein O.I. H.G. S.X.
0.22 19.4 0.97 Os09g0468000 AK103478.1 - Multi antimicrobial extrusion protein MatE familyprotein 3e+0 At5g65380 ripening-responsive protein, putative O.I. H.G. S.X.
0.10 5.7 0.97 Os11g0141366 9639.m00367 - - 2e+0 At1g54240 DNA binding O.I. H.G. S.X.
0.07 3.7 0.98 Os02g0310800 9630.m01984 - - 9e-1 At5g13110 G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2) O.I. H.G. S.X.
0.04 2.0 0.95 Os10g0165000 AK122169.1 - Arabidopsis protein of unknown function DUF266family protein 4e+0 At5g66970 GTP binding O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
63.5 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
34.5 99.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
25.7 99.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.6 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.2 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.250 1 GO:0006091 The chemical reactions and pathways resulting in the formation of precursor metabolites, substances from which energy is derived, and any process involved in the liberation of energy from these substances.
0.080 1 GO:0006855 The directed movement of drugs across a membrane into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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