CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0551500

Gene name
Homology with Arabidopsis Similar to At1g49820: ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE) (HF=6e-2)

Module size 6 genes

NF 0.62

%ile 83.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.90 Os05g0551500 AK108248.1 - Conserved hypothetical protein 6e-2 At1g49820 ATMTK (ARABIDOPSIS THALIANA S-METHYL-5-THIORIBOSE KINASE) O.I. H.G. S.X.
0.77 93.1 0.90 Os05g0574900 AK107256.1 - GRAS transcription factor domain containingprotein 6e-2 At4g13720 inosine triphosphate pyrophosphatase, putative / HAM1 family protein O.I. H.G. S.X.
0.63 82.7 0.90 Os09g0497100 AK070870.1 - Pumilio 2e-3 At4g25880 APUM6 (Arabidopsis Pumilio 6) O.I. H.G. S.X.
0.57 77.0 0.92 Os04g0429400 AK108728.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 1e-2 At5g67490 unknown protein O.I. H.G. S.X.
0.36 44.0 0.90 Os04g0429300 AK107268.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 2e-1 At4g36900 RAP2.10 (related to AP2 10) O.I. H.G. S.X.
0.36 44.0 0.94 Os02g0296400 BI800847 - Cell differentiation protein rcd1 4e+0 At1g80110 ATPP2-B11 (ARABIDOPSIS THALIANA PHLOEM PROTEIN 2-B11) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.7 99.7 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
15.0 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
12.5 98.3 GSM302917 endo6D_rep2 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling
12.5 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM302916 endo6D_rep1 GSE11966 Expression data from rice embryo,endosperm,root,leaf and seedling

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.013 1 GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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