Co-expression analysis

Gene ID	Os05g0547100
Gene name
Homology with Arabidopsis	Similar to At3g19220: SCO2 (SNOWY COTYLEDON 2) (HF=4e+0)
Module size	6 genes
NF	0.48
%ile	62.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.9	0.89	Os05g0547100	AK121657.1	-	Conserved hypothetical protein	4e+0	At3g19220	SCO2 (SNOWY COTYLEDON 2)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	0.87	Os03g0779000	NM_184984.1	-	Conserved hypothetical protein	2e+0	At3g25200	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	0.91	Os03g0390900	AK068299.1	-	-	8e-5	At5g22790	RER1 (RETICULATA-RELATED 1)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.47	62.3	0.87	Os09g0427300	AK121239.1	-	Hypothetical protein	3e+0	At3g49540	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.38	46.9	0.88	Os08g0263300	AK067503.1	-	Conserved hypothetical protein	4e-6	At4g05060	vesicle-associated membrane family protein / VAMP family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.29	31.1	0.86	Os04g0163800	AK063533.1	-	Protein of unknown function DUF594 family protein	3e-1	At3g27920	ATMYB0 (MYB DOMAIN PROTEIN 0)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
55.6	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
55.1	99.9	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
25.1	99.5	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
17.5	98.9	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.6	98.8	GSM422674	Musa_DNA_RICE	GSE16865	Heterologous microarrays for the study of drought stress in Musa
15.8	98.7	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0	98.4	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9	98.4	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6	98.4	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.0	98.3	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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