Co-expression analysis

Gene ID Os05g0519600
Gene name
Homology with ArabidopsisSimilar to At5g48953: LCR86 (Low-molecular-weight cysteine-rich 86) (HF=7e-2)
Module size 6 genes
NF 0.61
%ile 83.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.60.95Os05g0519600AK102422.1-4-methyl-5(B-hydroxyethyl)-thiazol monophosphatebiosynthesis enzyme7e-2At5g48953LCR86 (Low-molecular-weight cysteine-rich 86)O.I.H.G.S.X.
0.6382.70.95Os08g0407000CB658542-ab initio prediction with EST support8e-6At1g78010tRNA modification GTPase, putativeO.I.H.G.S.X.
0.6079.70.95Os01g0874800AK119315.1-5'-3' exonuclease domain containing protein5e-1At1g343805'-3' exonuclease family proteinO.I.H.G.S.X.
0.5573.70.95Os06g0498900AK065724.1-Conserved hypothetical protein8e-5At3g57180GTP bindingO.I.H.G.S.X.
0.4863.70.95Os01g0960300BI813093-Glucose inhibited division protein A7e+0At5g57510unknown proteinO.I.H.G.S.X.
0.4660.90.95Os09g0363100AK065958.1-Protein of unknown function UPF0044 family protein4e-4At4g29750RNA bindingO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.498.6GSM302916endo6D_rep1GSE11966Expression data from rice embryo,endosperm,root,leaf and seedlingLink to GEO
8.897.8GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
8.297.7GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
7.797.6GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
7.697.5GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.297.1GSM377080Genomic DNA - 45 day old leaf sample - mutant g6728GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
6.197.1GSM159219Seed (S5, 21 - 29 dap), biological rep 1GSE6893Expression data for reproductive development in riceLink to GEO
5.997.0GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
5.897.0GSM159221Seed (S5, 21 - 29 dap), biological rep 3GSE6893Expression data for reproductive development in riceLink to GEO
5.796.9GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



Back to the CoP portal site

Back to the KAGIANA project homepage