CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0517100

Gene name
Homology with Arabidopsis Similar to At5g01840: OFP1 (OVATE FAMILY PROTEIN 1) (HF=3e-2)

Module size 6 genes

NF 0.10

%ile 8.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.80 94.6 0.95 Os05g0517100 9633.m04111 - - 3e-2 At5g01840 OFP1 (OVATE FAMILY PROTEIN 1) O.I. H.G. S.X.
0.67 87.2 0.94 Os10g0532000 AK106313.1 - No apical meristem (NAM) protein domain containingprotein 3e-12 At5g66300 NAC105 (NAC DOMAIN CONTAINING PROTEIN 105) O.I. H.G. S.X.
0.50 68.0 0.95 Os08g0452100 9636.m03523 - Subtilisin-like protease (Fragment) 3e-10 At3g14240 subtilase family protein O.I. H.G. S.X.
0.09 4.9 0.96 Os06g0710400 AK062418.1 - Hypothetical protein 3e-2 At3g24860 hydroxyproline-rich glycoprotein family protein O.I. H.G. S.X.
0.04 2.0 0.95 Os04g0618900 9632.m05117 - - 6e-2 At2g01400 unknown protein O.I. H.G. S.X.
0.04 2.0 0.95 Os07g0646500 9635.m04542 - SWIM Zn-finger domain containing protein 3e-1 At3g42310 unknown protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.0 98.9 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
17.5 98.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.4 98.8 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
16.3 98.8 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0 98.6 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.9 98.4 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.6 98.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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