CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0486100

Gene name
Homology with Arabidopsis Similar to At5g49760: leucine-rich repeat family protein / protein kinase family protein (HF=7e-9)

Module size 6 genes

NF 0.66

%ile 88.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.87 Os05g0486100 AK119823.1 - Protein kinase domain containing protein 7e-9 At5g49760 leucine-rich repeat family protein / protein kinase family protein O.I. H.G. S.X.
0.67 87.2 0.86 Os11g0669100 AK068628.1 - Hypothetical protein 5e+0 At5g35620 LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1) O.I. H.G. S.X.
0.61 81.2 0.86 Os09g0472100 AK120390.1 - ABC transporter 2e-2 At1g51500 CER5 (ECERIFERUM 5) O.I. H.G. S.X.
0.61 81.2 0.87 Os10g0482900 AK071332.1 - Glutaredoxin domain containing protein 3e-4 At3g11920 glutaredoxin-related O.I. H.G. S.X.
0.50 68.0 0.87 Os01g0750600 NM_191238.1 - Protein kinase domain containing protein 4e-3 At3g18810 protein kinase family protein O.I. H.G. S.X.
0.44 58.1 0.87 Os07g0613600 AK107990.1 - Hypothetical protein 3e-1 At4g19270 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.2	0.80	Os12g0471100	AK069404.1	-	AAA ATPase, central region domain containingprotein	9e-1	At2g18190	AAA-type ATPase family protein	O.I.	H.G.	S.X.
0.57	77.0	0.81	Os06g0200800	AK111302.1	-	Conserved hypothetical protein	2e+0	At3g48760	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.
0.53	71.3	0.81	Os11g0666200	9639.m04120	-	Protein kinase domain containing protein	8e-1	At5g50430	UBC33 (ubiquitin-conjugating enzyme 33)	O.I.	H.G.	S.X.
0.46	60.9	0.82	Os08g0356800	AK068581.1	-	Plant protein of unknown function family protein	4e+0	At1g56010	NAC1	O.I.	H.G.	S.X.
0.44	58.1	0.86	Os03g0737300	AK071016.1	-	Magnesium-dependent phosphatase-1 family protein	6e+0	At5g18130	unknown protein	O.I.	H.G.	S.X.
0.38	46.9	0.80	Os02g0740600	AK107938.1	-	Conserved hypothetical protein	4e-3	At1g19020	unknown protein	O.I.	H.G.	S.X.
0.36	44.0	0.76	Os08g0412700	AK106356.1	-	Protein of unknown function DUF1262 family protein	3e+0	At5g10430	AGP4 (ARABINOGALACTAN PROTEIN 4)	O.I.	H.G.	S.X.
0.36	44.0	0.81	Os10g0550900	AK121010.1	-	Proline dehydrogenase domain containing protein	9e-1	At4g18620	-	O.I.	H.G.	S.X.
0.36	44.0	0.88	Os01g0609900	AK121722.1	-	PDR-like ABC transporter (PDR4 ABC transporter)	8e-22	At1g15520	PDR12 (PLEIOTROPIC DRUG RESISTANCE 12)	O.I.	H.G.	S.X.
0.33	38.8	0.84	Os11g0667600	AK105217.1	-	Protein kinase family protein	2e+0	At3g17410	serine/threonine protein kinase, putative	O.I.	H.G.	S.X.
0.32	36.3	0.80	Os03g0407900	AK068330.1	-	Protein kinase APK1B (EC 2.7.1.-)	2e-5	At2g05940	protein kinase, putative	O.I.	H.G.	S.X.
0.32	36.3	0.75	Os11g0227800	AK101773.1	-	Disease resistance protein family protein	2e+0	At5g44894	unknown protein	O.I.	H.G.	S.X.
0.30	32.7	0.78	Os11g0483000	9639.m02648	-	Cytochrome P450 family protein	8e-1	At3g48520	CYP94B3	O.I.	H.G.	S.X.
0.29	31.1	0.80	Os03g0322200	AK062978.1	-	Hypothetical protein	5e+0	At3g56500	serine-rich protein-related	O.I.	H.G.	S.X.
0.29	31.1	0.84	Os02g0777800	AK066978.1	-	Protein kinase domain containing protein	2e-9	At5g35580	ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase	O.I.	H.G.	S.X.
0.27	27.5	0.80	Os06g0218900	9634.m01125	-	LMBR1-like conserved region domain containingprotein	3e-1	At1g02450	NIMIN1 (NIM1-INTERACTING 1)	O.I.	H.G.	S.X.
0.27	27.5	0.85	Os03g0804500	AF072694.1	-	Germin-like protein subfamily T member 1 precursor	4e-1	At1g53580	GLY3 (GLYOXALASE II 3)	O.I.	H.G.	S.X.
0.26	25.6	0.77	Os05g0474800	AK119867.1	-	WRKY transcription factor 70	3e-4	At4g26440	WRKY34 (WRKY DNA-BINDING PROTEIN 34)	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
64.9 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
9.4 97.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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