CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0486100

Gene name
Homology with Arabidopsis Similar to At5g49760: leucine-rich repeat family protein / protein kinase family protein (HF=7e-9)

Module size 6 genes

NF 0.66

%ile 88.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.87 Os05g0486100 AK119823.1 - Protein kinase domain containing protein 7e-9 At5g49760 leucine-rich repeat family protein / protein kinase family protein O.I. H.G. S.X.
0.67 87.2 0.86 Os11g0669100 AK068628.1 - Hypothetical protein 5e+0 At5g35620 LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1) O.I. H.G. S.X.
0.61 81.2 0.86 Os09g0472100 AK120390.1 - ABC transporter 2e-2 At1g51500 CER5 (ECERIFERUM 5) O.I. H.G. S.X.
0.61 81.2 0.87 Os10g0482900 AK071332.1 - Glutaredoxin domain containing protein 3e-4 At3g11920 glutaredoxin-related O.I. H.G. S.X.
0.50 68.0 0.87 Os01g0750600 NM_191238.1 - Protein kinase domain containing protein 4e-3 At3g18810 protein kinase family protein O.I. H.G. S.X.
0.44 58.1 0.87 Os07g0613600 AK107990.1 - Hypothetical protein 3e-1 At4g19270 unknown protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.67	87.2	0.87	Os05g0486100	AK119823.1	-	Protein kinase domain containing protein	7e-9	At5g49760	leucine-rich repeat family protein / protein kinase family protein	O.I.	H.G.	S.X.
0.67	87.2	0.86	Os11g0669100	AK068628.1	-	Hypothetical protein	5e+0	At5g35620	LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1)	O.I.	H.G.	S.X.
0.61	81.2	0.86	Os09g0472100	AK120390.1	-	ABC transporter	2e-2	At1g51500	CER5 (ECERIFERUM 5)	O.I.	H.G.	S.X.
0.61	81.2	0.87	Os10g0482900	AK071332.1	-	Glutaredoxin domain containing protein	3e-4	At3g11920	glutaredoxin-related	O.I.	H.G.	S.X.
0.50	68.0	0.87	Os01g0750600	NM_191238.1	-	Protein kinase domain containing protein	4e-3	At3g18810	protein kinase family protein	O.I.	H.G.	S.X.
0.44	58.1	0.87	Os07g0613600	AK107990.1	-	Hypothetical protein	3e-1	At4g19270	unknown protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
64.9 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
9.4 97.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
64.9	99.9	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
9.4	97.9	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2	97.9	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0	97.6	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7	97.6	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6	97.5	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4	97.5	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3	97.5	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1	97.4	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8	97.3	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the grape gene, 1616189_at, orthologous to the query gene, Os05g0486100

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.86 95.1 1616189_at At5g49760 hypothetical protein LOC100260741 - 6e-18 At1g75820 CLV1 (CLAVATA 1) O.I. H.G. S.X.
0.48 68.8 1612831_s_at At5g49760 H+-pyrophosphatase - 5e-9 At1g15690 AVP1 O.I. H.G. S.X.
0.39 54.9 1622167_at At5g49760 hypothetical protein LOC100249144 - 9e-5 At5g23410 - O.I. H.G. S.X.
0.39 54.9 1615292_at At5g49760 similar to oligopeptidase A - 1e-37 At5g10540 peptidase M3 family protein / thimet oligopeptidase family protein O.I. H.G. S.X.
0.33 45.7 1616540_at At5g49760 hypothetical protein LOC100244175 - 3e-14 At1g71865 unknown protein O.I. H.G. S.X.
0.31 41.3 1622775_at At5g49760 hypothetical protein LOC100241371 - 3e-7 At4g00570 malate oxidoreductase, putative O.I. H.G. S.X.
0.30 39.4 1612742_s_at At5g49760 hypothetical protein LOC100260825 - 4e-3 At1g51600 TIFY2A O.I. H.G. S.X.
0.29 37.7 1609313_at At5g49760 similar to 2-oxo acid dehydrogenase, lipoyl-binding site - 6e-2 At4g22320 unknown protein O.I. H.G. S.X.
0.29 37.7 1618498_at At5g49760 hypothetical protein LOC100255416 - 7e-6 At5g01980 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.29 37.7 1611783_at At5g49760 hypothetical protein LOC100262520 - 1e+0 At2g43570 chitinase, putative O.I. H.G. S.X.
0.27 34.0 1616447_at At5g49760 hypothetical protein LOC100242721 - 5e+0 At5g25210 unknown protein O.I. H.G. S.X.
0.24 28.7 1609604_at At5g49760 hypothetical protein LOC100264326 - 2e-3 At1g34780 ATAPRL4 (APR-like 4) O.I. H.G. S.X.
0.23 27.5 1619413_at At5g49760 - - 7e-6 At1g64850 calcium-binding EF hand family protein O.I. H.G. S.X.
0.22 25.6 1606924_a_at At5g49760 similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase - 8e-86 At5g41700 UBC8 (UBIQUITIN CONJUGATING ENZYME 8) O.I. H.G. S.X.
0.21 24.0 1621021_at At5g49760 hypothetical protein LOC100249161 - 2e-1 At5g56610 dual specificity protein phosphatase family protein O.I. H.G. S.X.
0.20 22.4 1621964_at At5g49760 hypothetical protein LOC100259817 - 2e-1 At3g44950 glycine-rich protein O.I. H.G. S.X.
0.18 19.4 1612995_at At5g49760 - - 4e-18 At3g13340 WD-40 repeat family protein O.I. H.G. S.X.
0.18 19.4 1619524_at At5g49760 - - 6e-2 At5g13240 transcription regulator O.I. H.G. S.X.
0.14 14.4 1621040_at At5g49760 hypothetical protein LOC100252271 - 1e-1 At1g31750 proline-rich family protein O.I. H.G. S.X.
0.14 14.4 1612817_at At5g49760 hypothetical protein LOC100267132 - 3e-1 At3g62330 zinc knuckle (CCHC-type) family protein O.I. H.G. S.X.
0.13 13.3 1615154_at At5g49760 hypothetical protein LOC100251043 - 8e-6 At3g09085 unknown protein O.I. H.G. S.X.
0.13 13.3 1622461_at At5g49760 hypothetical protein LOC100265048 - 3e-28 At5g53570 RabGAP/TBC domain-containing protein O.I. H.G. S.X.

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.86	95.1	1616189_at	At5g49760	hypothetical protein LOC100260741	-	6e-18	At1g75820	CLV1 (CLAVATA 1)	O.I.	H.G.	S.X.
0.48	68.8	1612831_s_at	At5g49760	H+-pyrophosphatase	-	5e-9	At1g15690	AVP1	O.I.	H.G.	S.X.
0.39	54.9	1622167_at	At5g49760	hypothetical protein LOC100249144	-	9e-5	At5g23410	-	O.I.	H.G.	S.X.
0.39	54.9	1615292_at	At5g49760	similar to oligopeptidase A	-	1e-37	At5g10540	peptidase M3 family protein / thimet oligopeptidase family protein	O.I.	H.G.	S.X.
0.33	45.7	1616540_at	At5g49760	hypothetical protein LOC100244175	-	3e-14	At1g71865	unknown protein	O.I.	H.G.	S.X.
0.31	41.3	1622775_at	At5g49760	hypothetical protein LOC100241371	-	3e-7	At4g00570	malate oxidoreductase, putative	O.I.	H.G.	S.X.
0.30	39.4	1612742_s_at	At5g49760	hypothetical protein LOC100260825	-	4e-3	At1g51600	TIFY2A	O.I.	H.G.	S.X.
0.29	37.7	1609313_at	At5g49760	similar to 2-oxo acid dehydrogenase, lipoyl-binding site	-	6e-2	At4g22320	unknown protein	O.I.	H.G.	S.X.
0.29	37.7	1618498_at	At5g49760	hypothetical protein LOC100255416	-	7e-6	At5g01980	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.29	37.7	1611783_at	At5g49760	hypothetical protein LOC100262520	-	1e+0	At2g43570	chitinase, putative	O.I.	H.G.	S.X.
0.27	34.0	1616447_at	At5g49760	hypothetical protein LOC100242721	-	5e+0	At5g25210	unknown protein	O.I.	H.G.	S.X.
0.24	28.7	1609604_at	At5g49760	hypothetical protein LOC100264326	-	2e-3	At1g34780	ATAPRL4 (APR-like 4)	O.I.	H.G.	S.X.
0.23	27.5	1619413_at	At5g49760	-	-	7e-6	At1g64850	calcium-binding EF hand family protein	O.I.	H.G.	S.X.
0.22	25.6	1606924_a_at	At5g49760	similar to UBC9 (UBIQUITIN CONJUGATING ENZYME 9); ubiquitin-protein ligase	-	8e-86	At5g41700	UBC8 (UBIQUITIN CONJUGATING ENZYME 8)	O.I.	H.G.	S.X.
0.21	24.0	1621021_at	At5g49760	hypothetical protein LOC100249161	-	2e-1	At5g56610	dual specificity protein phosphatase family protein	O.I.	H.G.	S.X.
0.20	22.4	1621964_at	At5g49760	hypothetical protein LOC100259817	-	2e-1	At3g44950	glycine-rich protein	O.I.	H.G.	S.X.
0.18	19.4	1612995_at	At5g49760	-	-	4e-18	At3g13340	WD-40 repeat family protein	O.I.	H.G.	S.X.
0.18	19.4	1619524_at	At5g49760	-	-	6e-2	At5g13240	transcription regulator	O.I.	H.G.	S.X.
0.14	14.4	1621040_at	At5g49760	hypothetical protein LOC100252271	-	1e-1	At1g31750	proline-rich family protein	O.I.	H.G.	S.X.
0.14	14.4	1612817_at	At5g49760	hypothetical protein LOC100267132	-	3e-1	At3g62330	zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.
0.13	13.3	1615154_at	At5g49760	hypothetical protein LOC100251043	-	8e-6	At3g09085	unknown protein	O.I.	H.G.	S.X.
0.13	13.3	1622461_at	At5g49760	hypothetical protein LOC100265048	-	3e-28	At5g53570	RabGAP/TBC domain-containing protein	O.I.	H.G.	S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays

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Gene ID	Os05g0486100
Gene name
Homology with Arabidopsis	Similar to At5g49760: leucine-rich repeat family protein / protein kinase family protein (HF=7e-9)
Module size	6 genes
NF	0.66
%ile	88.2

Co-expression analysis

Gene ID Os05g0486100 Gene name Homology with ArabidopsisSimilar to At5g49760: leucine-rich repeat family protein / protein kinase family protein (HF=7e-9) Module size 6 genes NF 0.66 %ile 88.2

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumZea_mays

Gene ID Os05g0486100

Gene name
Homology with Arabidopsis Similar to At5g49760: leucine-rich repeat family protein / protein kinase family protein (HF=7e-9)

Module size 6 genes

NF 0.66

%ile 88.2

SF Genes GO ID Process Name Link to AmiGO

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Zea_mays