CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0486100

Gene name
Homology with Arabidopsis Similar to At5g49760: leucine-rich repeat family protein / protein kinase family protein (HF=7e-9)

Module size 6 genes

NF 0.66

%ile 88.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.87 Os05g0486100 AK119823.1 - Protein kinase domain containing protein 7e-9 At5g49760 leucine-rich repeat family protein / protein kinase family protein O.I. H.G. S.X.
0.67 87.2 0.86 Os11g0669100 AK068628.1 - Hypothetical protein 5e+0 At5g35620 LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1) O.I. H.G. S.X.
0.61 81.2 0.86 Os09g0472100 AK120390.1 - ABC transporter 2e-2 At1g51500 CER5 (ECERIFERUM 5) O.I. H.G. S.X.
0.61 81.2 0.87 Os10g0482900 AK071332.1 - Glutaredoxin domain containing protein 3e-4 At3g11920 glutaredoxin-related O.I. H.G. S.X.
0.50 68.0 0.87 Os01g0750600 NM_191238.1 - Protein kinase domain containing protein 4e-3 At3g18810 protein kinase family protein O.I. H.G. S.X.
0.44 58.1 0.87 Os07g0613600 AK107990.1 - Hypothetical protein 3e-1 At4g19270 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
64.9 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
9.4 97.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.49749.1.S1_at, orthologous to the query gene, Os05g0486100

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.2 TaAffx.49749.1.S1_at At5g49760 - - 1e-12 At1g79620 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.
0.07 8.6 Ta.19604.1.S1_at At5g49760 - - 8e+0 At5g46795 MSP2 (microspore-specific promoter 2) O.I. H.G. S.X.
0.06 7.6 TaAffx.111776.1.S1_x_at At5g49760 - - 9e-1 At5g16650 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.03 4.7 Ta.25139.1.S1_at At5g49760 - - 7e+0 At5g17150 - O.I. H.G. S.X.
0.02 3.6 Ta.11730.1.S1_at At5g49760 - - 1e+0 At1g75470 ATPUP15 O.I. H.G. S.X.
0.01 2.4 TaAffx.38420.1.S1_at At5g49760 - - 3e-1 At1g51960 IQD27 (IQ-domain 27) O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Vitis_vinifera
Zea_mays

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