CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0486100

Gene name
Homology with Arabidopsis Similar to At5g49760: leucine-rich repeat family protein / protein kinase family protein (HF=7e-9)

Module size 6 genes

NF 0.66

%ile 88.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.87 Os05g0486100 AK119823.1 - Protein kinase domain containing protein 7e-9 At5g49760 leucine-rich repeat family protein / protein kinase family protein O.I. H.G. S.X.
0.67 87.2 0.86 Os11g0669100 AK068628.1 - Hypothetical protein 5e+0 At5g35620 LSP1 (LOSS OF SUSCEPTIBILITY TO POTYVIRUS 1) O.I. H.G. S.X.
0.61 81.2 0.86 Os09g0472100 AK120390.1 - ABC transporter 2e-2 At1g51500 CER5 (ECERIFERUM 5) O.I. H.G. S.X.
0.61 81.2 0.87 Os10g0482900 AK071332.1 - Glutaredoxin domain containing protein 3e-4 At3g11920 glutaredoxin-related O.I. H.G. S.X.
0.50 68.0 0.87 Os01g0750600 NM_191238.1 - Protein kinase domain containing protein 4e-3 At3g18810 protein kinase family protein O.I. H.G. S.X.
0.44 58.1 0.87 Os07g0613600 AK107990.1 - Hypothetical protein 3e-1 At4g19270 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
64.9 99.9 GSM195227 Anther GSE7951 Genome-wide gene expression profiling of rice stigma
9.4 97.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.2 97.9 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.0 97.6 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7 97.6 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6 97.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.4 97.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.3 97.5 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.1 97.4 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.8 97.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

A co-expression module including the barley gene, Contig14065_at, orthologous to the query gene, Os05g0486100

VF %ile Gene ID Repr. ID Gene Name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 84.7 Contig14065_at At5g49760 - - 6e-8 At5g49770 leucine-rich repeat transmembrane protein kinase, putative O.I. H.G. S.X.
0.86 94.8 HF19N13r_s_at At5g49760 - - 3e+0 At1g24147 unknown protein O.I. H.G. S.X.
0.82 93.1 Contig3001_at At5g49760 - - 9e-12 At4g27230 HTA2 (histone H2A) O.I. H.G. S.X.
0.74 89.1 Contig3350_at At5g49760 - - 5e-2 At5g10220 ANN6 (ANNEXIN ARABIDOPSIS 6) O.I. H.G. S.X.
0.71 87.1 Contig3903_x_at At5g49760 hypothetical protein LOC732694 - 3e+0 At1g65150 meprin and TRAF homology domain-containing protein / MATH domain-containing protein O.I. H.G. S.X.
0.70 86.0 Contig9287_at At5g49760 - - 3e-3 At3g47890 ubiquitin thiolesterase/ zinc ion binding O.I. H.G. S.X.
0.70 86.0 Contig3625_at At5g49760 - - 8e-32 At3g02630 acyl-(acyl-carrier-protein) desaturase, putative / stearoyl-ACP desaturase, putative O.I. H.G. S.X.
0.57 74.9 Contig15730_at At5g49760 - - 5e+0 At1g11755 LEW1 (LEAF WILTING 1) O.I. H.G. S.X.
0.53 69.7 Contig22402_at At5g49760 potassium transporter HAK4 - 2e-8 At3g02050 KUP3 (K+ UPTAKE TRANSPORTER 3) O.I. H.G. S.X.
0.38 49.5 Contig22208_at At5g49760 - - 2e+0 At1g02330 - O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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