Co-expression analysis

Gene ID Os05g0485800
Gene name
Homology with ArabidopsisSimilar to At3g13390: sks11 (SKU5 Similar 11) (HF=6e-1)
Module size 6 genes
NF 0.60
%ile 81.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8395.80.98Os05g0485800AK108702.1-Pollen-specific protein NTP303 precursor6e-1At3g13390sks11 (SKU5 Similar 11)O.I.H.G.S.X.
0.7189.60.98Os05g0588500AK069614.1-MtN3 and saliva related transmembrane proteinfamily protein2e-1At5g62850AtVEX1 (VEGETATIVE CELL EXPRESSED1)O.I.H.G.S.X.
0.6787.20.99Os07g0274400AK100692.1-B12D family protein5e+0At3g48140senescence-associated protein, putativeO.I.H.G.S.X.
0.6181.20.98Os10g0369900AK069323.1-Myo-inositol-1-phosphate synthase5e-49At5g10170MIPS3 (MYO-INOSITOL-1-PHOSTPATE SYNTHASE 3)O.I.H.G.S.X.
0.5068.00.99Os01g0311700AK072493.1-Plant invertase/pectin methylesterase inhibitordomain containing protein1e-1At4g22000unknown proteinO.I.H.G.S.X.
0.2016.50.99Os07g0525400AK121393.1-RabGAP/TBC domain containing protein2e-5At5g54780RAB GTPase activatorO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.398.9GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
16.198.7GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
15.398.7GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.498.6GSM377076Genomic DNA - 45 day old leaf sample - mutant g6485GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.398.6GSM377071Genomic DNA - 45 day old leaf sample - mutant d256GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
14.198.5GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.898.5GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.198.4GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
13.098.4GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.098.3GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.2861GO:0006021The chemical reactions and pathways resulting in the formation of inositol, 1,2,3,4,5,6-cyclohexanehexol, a growth factor for animals and microorganisms.Link to AmiGO
0.1431GO:0008654The chemical reactions and pathways resulting in the formation of phospholipids, any lipid containing phosphoric acid as a mono- or diester.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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