Co-expression analysis

Gene ID	Os05g0485000
Gene name
Homology with Arabidopsis	Similar to At1g03600: photosystem II family protein (HF=2e+0)
Module size	6 genes
NF	0.55
%ile	73.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	95.8	0.97	Os05g0485000	AK106318.1	-	Conserved hypothetical protein	2e+0	At1g03600	photosystem II family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.80	94.6	0.98	Os05g0559000	AK100171.1	-	Glyoxal oxidase, N-terminal domain containingprotein	7e-2	At1g14430	glyoxal oxidase-related	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.57	77.0	0.95	Os04g0508600	AK120762.1	-	Lung seven transmembrane receptor family protein	2e-1	At5g42090	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.57	77.0	0.97	Os10g0193500	AK107022.1	-	Plant lipid transfer/seed storage/trypsin-alphaamylase inhibitor domain containing protein	3e-1	At3g50870	MNP (MONOPOLE)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.42	53.9	0.97	Os06g0472900	AK072945.1	-	Haem peroxidase, plant/fungal/bacterial familyprotein	1e-2	At5g51890	peroxidase	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.19	15.1	0.97	Os09g0297800	AK064738.1	-	Conserved hypothetical protein	4e-1	At4g28280	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.4	98.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
9.1	97.9	GSM262005	IAC165, 4 days after infection with S. hermonthica, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
5.7	96.9	GSM262007	IAC165, 11 days after mock-infection, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
5.4	96.8	GSM262006	IAC165, 11 days after mock-infection, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
5.2	96.7	GSM261999	IAC165, 2 days after mock-infection, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
4.7	96.4	GSM262009	IAC165, 11 days after infection with S. hermonthica, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
4.6	96.3	GSM278855	KT95-418-non-infected, biological rep3	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
4.5	96.3	GSM262003	IAC165, 4 days after mock-infection, biological replicate #2	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica
4.4	96.2	GSM359918	IR63731 root, salt-treated, biological replicate 3	GSE14403	Root-specific transcriptional profiling of contrasting rice genotypes in response to salinity stress
4.4	96.2	GSM262002	IAC165, 4 days after mock-infection, biological replicate #1	GSE10373	Rice cultivars undergoing a susceptible and resistant interaction with the parasitic plant Striga hermonthica

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO
0.182	1	GO:0006885	Any process involved in the maintenance of an internal equilibrium of hydrogen ions, thereby modulating the internal pH, within an organism or cell.
0.022	1	GO:0006979	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

Back to the CoP portal site

Back to the KAGIANA project homepage