CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0481900

Gene name
Homology with Arabidopsis Similar to At5g01990: auxin efflux carrier family protein (HF=1e-9)

Module size 14 genes

NF 0.51

%ile 68.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 89.6 0.77 Os05g0481900 AK119626.1 - Auxin Efflux Carrier family protein 1e-9 At5g01990 auxin efflux carrier family protein O.I. H.G. S.X.
0.79 93.6 0.83 Os02g0631100 AK105126.1 - Conserved hypothetical protein 2e+0 At4g03320 tic20-IV (TRANSLOCON AT THE INNER ENVELOPE MEMBRANE OF CHLOROPLASTS 20-IV) O.I. H.G. S.X.
0.77 93.1 0.81 Os03g0283900 AK105569.1 - - 6e-2 At1g07870 protein kinase family protein O.I. H.G. S.X.
0.67 87.2 0.84 Os02g0548100 9630.m03271 - - 4e-2 At1g67770 TEL2 (TERMINAL EAR1-LIKE 2) O.I. H.G. S.X.
0.63 82.7 0.83 Os03g0748500 AK110695.1 - Flavodoxin/nitric oxide synthase domain containingprotein 2e-3 At5g54500 FQR1 (FLAVODOXIN-LIKE QUINONE REDUCTASE 1) O.I. H.G. S.X.
0.61 81.2 0.87 Os12g0527500 AK109836.1 - Hypothetical protein 4e+0 At4g05070 unknown protein O.I. H.G. S.X.
0.52 69.6 0.88 Os10g0139300 AK107379.1 - Cyclin-like F-box domain containing protein 8e-1 At4g16750 DRE-binding transcription factor, putative O.I. H.G. S.X.
0.50 68.0 0.85 Os06g0656700 AK110668.1 - Hypothetical protein 6e+0 At5g19860 unknown protein O.I. H.G. S.X.
0.46 60.9 0.87 Os04g0429300 AK107268.1 - Basic helix-loop-helix dimerisation region bHLHdomain containing protein 2e-1 At4g36900 RAP2.10 (related to AP2 10) O.I. H.G. S.X.
0.44 58.1 0.85 Os08g0157000 9636.m00537 - Mitogen-activated protein kinase 4 9e-13 At1g01560 ATMPK11 O.I. H.G. S.X.
0.40 51.1 0.83 Os02g0487300 AK107615.1 - Conserved hypothetical protein 7e-1 At4g01590 unknown protein O.I. H.G. S.X.
0.38 46.9 0.83 Os08g0161500 AK060630.1 - Esterase/lipase/thioesterase domain containingprotein 3e-7 At1g32190 - O.I. H.G. S.X.
0.35 41.7 0.83 Os01g0851300 AK101770.1 - - 4e-1 At1g35420 dienelactone hydrolase family protein O.I. H.G. S.X.
0.29 31.1 0.79 Os01g0228500 AK119627.1 - Harpin-induced 1 domain containing protein 7e-1 At2g23310 ATRER1C1 O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
32.4 99.8 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
26.9 99.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
14.7 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.9 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.2 98.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.3 98.2 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.074 1 GO:0015979 The synthesis by organisms of organic chemical compounds, especially carbohydrates, from carbon dioxide (CO2) using energy obtained from light rather than from the oxidation of chemical compounds.
0.013 1 GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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