Co-expression analysis

Gene ID Os05g0467100
Gene name
Homology with ArabidopsisSimilar to At3g44020: thylakoid lumenal P17.1 protein (HF=1e+0)
Module size 6 genes
NF 0.71
%ile 93.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9198.90.99Os05g04671009633.m03635--1e+0At3g44020thylakoid lumenal P17.1 proteinO.I.H.G.S.X.
0.6787.20.99Os07g0240001NM_186777.1--2e+0At1g77540H3/H4 histone acetyltransferaseO.I.H.G.S.X.
0.6382.70.98Os09g03489009637.m01537--1e-2At1g22300GRF10 (GENERAL REGULATORY FACTOR 10)O.I.H.G.S.X.
0.6382.70.98Os10g0177700NM_195154.1--1e+0At4g02730transducin family protein / WD-40 repeat family proteinO.I.H.G.S.X.
0.6181.20.98Os09g0517900BM038469-UDP-glucuronosyl/UDP-glucosyltransferase familyprotein1e+1At3g54770RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.5777.00.98Os06g05165009634.m03040--7e+0At4g30460glycine-rich proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
48.999.9GSM302915emb6D_rep2GSE11966Expression data from rice embryo,endosperm,root,leaf and seedlingLink to GEO
14.198.5GSM377075Genomic DNA - 45 day old leaf sample - mutant g650GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
12.798.4GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.998.3GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
11.998.3GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.598.2GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.598.2GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
11.298.2GSM377073Genomic DNA - 45 day old leaf sample - mutant d2943GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
11.098.2GSM377072Genomic DNA - 45 day old leaf sample - mutant d1137GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.798.1GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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