| Gene ID | Os05g0466600 |
| Gene name | |
| Homology with Arabidopsis | Similar to At5g59690: histone H4 (HF=7e-18) |
| Module size | 11 genes |
| NF | 0.46 |
| %ile | 58.7 |
| VF | %ile | CC | Gene ID | Repr. ID | Gene name | Func. | Ev | AGI code | Arabidopsis gene name | O.I. | H.G. | S.X. | Other DB |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 0.59 | 78.0 | 0.95 | Os05g0466600 | AK119240.1 | - | - | 7e-18 | At5g59690 | histone H4 | O.I. | H.G. | S.X. | |
| 0.59 | 78.0 | 0.96 | Os12g0541400 | BQ907958 | - | Hypothetical protein | 3e+0 | At5g01300 | phosphatidylethanolamine-binding family protein | O.I. | H.G. | S.X. | |
| 0.59 | 78.0 | 0.96 | Os06g0660700 | AK058614.1 | - | Ubiquitin-conjugating enzyme E2S (EC 6.3.2.19)(Ubiquitin-conjugating enzyme E2-24 kDa)(Ubiquitin-protein ligase) (Ubiquitin carrier protein)(E2-EPF5) | 1e-17 | At5g05080 | UBC22 (ubiquitin-conjugating enzyme 22) | O.I. | H.G. | S.X. | |
| 0.58 | 77.0 | 0.95 | Os03g0831200 | AK073709.1 | - | Zn-finger, GATA type domain containing protein | 1e-1 | At5g28630 | glycine-rich protein | O.I. | H.G. | S.X. | |
| 0.47 | 62.3 | 0.97 | Os02g0179300 | AK069065.1 | - | RAD23 protein, isoform II | 9e-10 | At1g16190 | DNA repair protein RAD23, putative | O.I. | H.G. | S.X. | |
| 0.41 | 52.4 | 0.95 | Os02g0100300 | 9630.m00003 | - | HSP associated protein like | 2e-8 | At4g22670 | AtHip1 (Arabidopsis thaliana Hsp70-interacting protein 1) | O.I. | H.G. | S.X. | |
| 0.40 | 51.1 | 0.96 | Os07g0688800 | AK068462.1 | - | Aldehyde dehydrogenase domain containing protein | 4e-22 | At3g66658 | ALDH22a1 (Aldehyde Dehydrogenase 22a1) | O.I. | H.G. | S.X. | |
| 0.40 | 51.1 | 0.97 | Os11g0568500 | AK059656.1 | - | Prefoldin beta-like family protein | 7e-3 | At3g22480 | prefoldin-related KE2 family protein | O.I. | H.G. | S.X. | |
| 0.32 | 36.3 | 0.95 | Os03g0108800 | AK065932.1 | - | Cell division control protein 2 homolog 1 (EC2.7.1.37) | 8e-4 | At3g48750 | CDC2 (CELL DIVISION CONTROL 2) | O.I. | H.G. | S.X. | |
| 0.32 | 36.3 | 0.97 | Os01g0710000 | AK111794.1 | - | - | 8e-63 | At2g19520 | FVE | O.I. | H.G. | S.X. | |
| 0.23 | 21.2 | 0.97 | Os05g0314100 | AK121220.1 | - | Small nuclear ribonucleoprotein (Sm protein)family protein | 6e-46 | At2g47640 | small nuclear ribonucleoprotein D2, putative / snRNP core protein D2, putative / Sm protein D2, putative | O.I. | H.G. | S.X. |
| Std2 GX | %ile | GSM ID | Assay name | GSE ID | Experiment title | Link to GEO |
|---|---|---|---|---|---|---|
| 30.6 | 99.7 | GSM195227 | Anther | GSE7951 | Genome-wide gene expression profiling of rice stigma | |
| 11.3 | 98.2 | GSM377075 | Genomic DNA - 45 day old leaf sample - mutant g650 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 10.1 | 98.0 | GSM377084 | Genomic DNA - 45 day old leaf sample - mutant f1856 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 9.4 | 97.9 | GSM377070 | Genomic DNA - 45 day old leaf sample - mutant d1 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 9.1 | 97.9 | GSM422672 | Drought | GSE16865 | Heterologous microarrays for the study of drought stress in Musa | |
| 8.8 | 97.8 | GSM422676 | Control | GSE16865 | Heterologous microarrays for the study of drought stress in Musa | |
| 8.8 | 97.8 | GSM377072 | Genomic DNA - 45 day old leaf sample - mutant d1137 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 8.8 | 97.8 | GSM377073 | Genomic DNA - 45 day old leaf sample - mutant d2943 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 7.8 | 97.6 | GSM377071 | Genomic DNA - 45 day old leaf sample - mutant d256 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| 7.5 | 97.5 | GSM377081 | Genomic DNA - 45 day old leaf sample - mutant g7534 | GSE15071 | Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays | |
| SF | Genes | GO ID | Process Name | Link to AmiGO |
|---|---|---|---|---|
| 0.091 | 1 | GO:0006289 | A DNA repair process in which a small region of the strand surrounding the damage is removed from the DNA helix as an oligonucleotide. The small gap left in the DNA helix is filled in by the sequential action of DNA polymerase and DNA ligase. Nucleotide excision repair recognizes a wide range of substrates, including damage caused by UV irradiation (pyrimidine dimers and 6-4 photoproducts) and chemicals (intrastrand cross-links and bulky adducts). |  |
| 0.080 | 1 | GO:0006397 | Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide. | |
| 0.071 | 1 | GO:0008380 | The process of removing sections of the primary RNA transcript to remove sequences not present in the mature form of the RNA and joining the remaining sections to form the mature form of the RNA. | |
| Arabidopsis_thaliana |
| Glycine_max |
| Hordeum_vulgare |
| Populus_trichocarpa |
| Triticum_aestivum |
| Vitis_vinifera |
| Zea_mays |
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