Co-expression analysis

Gene ID	Os05g0462700
Gene name
Homology with Arabidopsis	Similar to At5g59690: histone H4 (HF=6e-24)
Module size	6 genes
NF	0.46
%ile	58.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.39	48.3	0.79	Os05g0462700	AK105816.1	-	Histone H4 variant TH011	6e-24	At5g59690	histone H4	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	0.75	Os11g0661900	AK064062.1	-	Hypothetical protein	8e-1	At5g57640	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	0.78	Os04g0419600	CR282432	-	Histone H3	5e-21	At1g09200	histone H3	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	0.78	Os12g0628400	AK061110.1	-	Fatty acid hydroxylase domain containing protein	1e-8	At4g20870	FAH2 (FATTY ACID HYDROXYLASE 2)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	0.79	Os01g0866200	CA754851	-	Histone H3	3e-47	At1g09200	histone H3	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.38	46.9	0.78	Os08g0106100	AK071868.1	-	Hypothetical protein	4e-1	At3g45870	integral membrane family protein / nodulin MtN21-related	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

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Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
38.7	99.8	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
28.6	99.6	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
6.0	97.0	GSM278851	KT95-418-RSV infected,biological rep2	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
5.1	96.6	GSM278850	KT95-418-RSV infected, biological rep1	GSE11025	Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
4.7	96.4	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.3	96.1	GSM375767	gid1-3_ shoot_replicate 3	GSE15046	Transcriptome analysis of gibberellin-signaling mutants in rice
4.0	95.9	GSM375765	gid1-3_ shoot_replicate 1	GSE15046	Transcriptome analysis of gibberellin-signaling mutants in rice
3.8	95.7	GSM357133	14-day-old seedling, rep 2	GSE14275	Expression data for heat shock in rice seedlings
3.7	95.6	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
3.5	95.3	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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