Co-expression analysis

Gene ID Os05g0461300
Gene name
Homology with ArabidopsisSimilar to At3g53610: ATRAB8 (HF=4e-48)
Module size 13 genes
NF 0.55
%ile 73.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8194.80.97Os05g0461300AK111917.1-Ras-related protein Rab-8A (Oncogene c-mel)4e-48At3g53610ATRAB8O.I.H.G.S.X.
0.7088.40.97Os08g0248900AK073613.1-ADP-ribosylation factor 32e-46At2g24765ARF3 (ADP-RIBOSYLATION FACTOR 3)O.I.H.G.S.X.
0.6483.40.98Os03g0355600AK068938.1-Adapter-related protein complex 1 beta 1 subunit(Beta-adaptin 1) (Adaptor protein complex AP-1 beta-1subunit) (Golgi adaptor HA1/AP1 adaptin beta subunit)(Clathrin assembly protein complex 1 beta large chain).Splice isoform B0At4g23460beta-adaptin, putativeO.I.H.G.S.X.
0.6281.50.98Os05g0556100AK065908.1-SDL5A1e-43At3g61760ADL1B (ARABIDOPSIS DYNAMIN-LIKE 1B)O.I.H.G.S.X.
0.6181.20.97Os04g0502200AK066572.1-Conserved hypothetical protein1e-7At5g11040-O.I.H.G.S.X.
0.6079.70.97Os06g0568000AK071892.1-Nonaspanin (TM9SF) family protein4e-107At3g13772endomembrane protein 70, putativeO.I.H.G.S.X.
0.5676.30.97Os03g0227000AK068454.1-Coatomer gamma subunit (Gamma-coat protein)(Gamma-COP)1e-25At4g34450coatomer gamma-2 subunit, putative / gamma-2 coat protein, putative / gamma-2 COP, putativeO.I.H.G.S.X.
0.5068.00.97Os11g0181100AK100605.1-Nonaspanin (TM9SF) family protein2e-70At1g10950endomembrane protein 70, putativeO.I.H.G.S.X.
0.4964.40.97Os02g0537900AK070310.1-Vacuolar-type H+-translocating inorganicpyrophosphatase (EC 3.6.1.1)5e-87At1g16780vacuolar-type H+-translocating inorganic pyrophosphatase, putativeO.I.H.G.S.X.
0.4458.10.97Os08g0554900AK072840.1-Nonaspanin (TM9SF) family protein2e-39At5g10840endomembrane protein 70, putativeO.I.H.G.S.X.
0.4152.40.97Os07g0657200AK072927.1-WD40-like domain containing protein3e-8At3g63460WD-40 repeat family proteinO.I.H.G.S.X.
0.4051.10.98Os03g0804300AK067295.1-Huntingtin-interacting protein 146e-14At3g60800zinc finger (DHHC type) family proteinO.I.H.G.S.X.
0.3236.30.97Os02g0297600AK122023.1-Protein of unknown function DUF707 family protein8e-20At1g67850unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
34.599.8GSM422676ControlGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
25.699.5GSM422674Musa_DNA_RICEGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
24.199.4GSM422672DroughtGSE16865Heterologous microarrays for the study of drought stress in MusaLink to GEO
21.699.2GSM195228EmbryoGSE7951Genome-wide gene expression profiling of rice stigmaLink to GEO
11.598.2GSM377070Genomic DNA - 45 day old leaf sample - mutant d1GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
10.298.0GSM377082Genomic DNA - 45 day old leaf sample - mutant g9799GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.798.0GSM377077Genomic DNA - 45 day old leaf sample - mutant g6489GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.798.0GSM377085Genomic DNA - 45 day old leaf sample - mutant f2045GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.697.9GSM377081Genomic DNA - 45 day old leaf sample - mutant g7534GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO
9.497.9GSM377084Genomic DNA - 45 day old leaf sample - mutant f1856GSE15071Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarraysLink to GEO

Biological processes inferred to relate to the module

SFGenesGO IDProcess NameLink to AmiGO
0.0652GO:0007264Any series of molecular signals in which a small monomeric GTPase relays one or more of the signals.Link to AmiGO
0.0571GO:0007186The series of molecular signals generated as a consequence of a G-protein coupled receptor binding to its physiological ligand.Link to AmiGO
0.0511GO:0015992The directed movement of protons (hydrogen ions) into, out of, within or between cells.Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays



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