Co-expression analysis

Gene ID	Os05g0454200
Gene name
Homology with Arabidopsis	Similar to At4g38430: ROPGEF1 (HF=1e-15)
Module size	6 genes
NF	0.57
%ile	77.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	93.1	0.88	Os05g0454200	AK101945.1	-	Protein of unknown function DUF315 domaincontaining protein	1e-15	At4g38430	ROPGEF1	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.80	94.6	0.90	Os07g0159700	9635.m00597	-	Protein kinase domain containing protein	3e-2	At3g17420	GPK1	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.73	91.1	0.88	Os03g0310000	AK060625.1	-	Lipolytic enzyme, G-D-S-L family protein	5e-11	At5g18430	GDSL-motif lipase/hydrolase family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.53	71.3	0.90	Os08g0433400	AK059468.1	-	Myb, DNA-binding domain containing protein	2e-20	At3g01140	MYB106 (myb domain protein 106)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.47	62.3	0.89	Os07g0105900	AK059175.1	-	NB-ARC domain containing protein	1e-2	At2g22430	ATHB6	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.29	31.1	0.89	Os02g0256100	AK059595.1	-	Glycoside hydrolase, family 28 protein	1e-24	At4g23820	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
49.5	99.9	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
34.3	99.8	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
15.3	98.7	GSM377086	Genomic DNA - 45 day old leaf sample - IR64 wtcheck	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8	98.3	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7	98.2	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.2	98.2	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.9	98.1	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5	98.1	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.3	98.1	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.1	98.0	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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