Co-expression analysis

Gene ID	Os05g0421600
Gene name
Homology with Arabidopsis	Similar to At1g01720: ATAF1 (HF=3e-18)
Module size	6 genes
NF	0.67
%ile	90.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.6	0.82	Os05g0421600	AK107746.1	-	Conserved hypothetical protein	3e-18	At1g01720	ATAF1	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.80	94.6	0.87	Os12g0478200	AK063578.1	-	GRAM domain containing protein	4e-4	At5g23360	GRAM domain-containing protein / ABA-responsive protein-related	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.61	81.2	0.81	Os01g0214500	AK062484.1	-	Conserved hypothetical protein	1e+0	At4g21620	glycine-rich protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.60	79.7	0.86	Os01g0511100	AK070914.1	-	Universal stress protein (Usp) family protein	2e-3	At1g68300	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.46	60.9	0.83	Os09g0325700	AK063334.1	-	Protein phosphatase 2C (EC 3.1.3.16) (PP2C)	7e-1	At5g06210	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	0.86	Os05g0595100	AB087745.1	-	UDP-glucose 4-epimerase	1e-11	At4g23920	UGE2 (UDP-D-glucose/UDP-D-galactose 4-epimerase 2)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
56.5	99.9	GSM195227	Anther	GSE7951	Genome-wide gene expression profiling of rice stigma
9.4	97.9	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.0	97.8	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.8	97.8	GSM154833	Root_tZ-treatment_30min_replicate 1	GSE6719	Cytokinin responsive genes in rice
8.5	97.7	GSM154942	Root_tZ-treatment_120min_replicate 1	GSE6719	Cytokinin responsive genes in rice
8.4	97.7	GSM154944	Root_tZ-treatment_120min_replicate 3	GSE6719	Cytokinin responsive genes in rice
8.1	97.7	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.8	97.6	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.7	97.6	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
7.6	97.5	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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