CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0411300

Gene name
Homology with Arabidopsis Similar to At3g56660: BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49) (HF=1e-3)

Module size 12 genes

NF 0.42

%ile 52.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.72 89.8 0.93 Os05g0411300 AK073142.1 - Conserved hypothetical protein 1e-3 At3g56660 BZIP49 (BASIC REGION/LEUCINE ZIPPER MOTIF PROTEIN 49) O.I. H.G. S.X.
0.61 81.2 0.95 Os03g0278300 AK071965.1 - Transcriptional coactivator-like protein 6e-12 At5g02530 RNA and export factor-binding protein, putative O.I. H.G. S.X.
0.41 52.4 0.96 Os03g0280000 AK120269.1 - ABC transporter, transmembrane region domaincontaining protein 2e-72 At3g55320 PGP20 (P-GLYCOPROTEIN 20) O.I. H.G. S.X.
0.40 51.1 0.96 Os03g0274000 AK060769.1 - Oxysterol-binding protein family protein 1e-24 At5g02100 UNE18 (UNFERTILIZED EMBRYO SAC 18) O.I. H.G. S.X.
0.38 46.9 0.95 Os03g0756200 AK111668.1 - Protein kinase domain containing protein 1e-17 At3g02130 RPK2 (RECEPTOR-LIKE PROTEIN KINASE 2) O.I. H.G. S.X.
0.36 44.0 0.95 Os01g0911100 AK062123.1 - ATP-dependent RNA helicase-like protein 1e-17 At5g63120 ethylene-responsive DEAD box RNA helicase, putative (RH30) O.I. H.G. S.X.
0.36 44.0 0.95 Os02g0601800 AK121891.1 - Bromodomain containing protein 3e-2 At2g22080 unknown protein O.I. H.G. S.X.
0.36 44.0 0.96 Os01g0510100 CB656690 - MAP kinase kinase 1 5e-30 At5g56580 MKK6 (MAP KINASE KINASE 6) O.I. H.G. S.X.
0.35 41.7 0.97 Os01g0556400 CB657305 - Heat shock protein DnaJ family protein 4e-3 At5g05750 DNAJ heat shock N-terminal domain-containing protein O.I. H.G. S.X.
0.31 34.5 0.95 Os04g0609600 AK070129.1 - Protein phosphatase type 2C 3e-3 At5g27930 protein phosphatase 2C, putative / PP2C, putative O.I. H.G. S.X.
0.23 21.2 0.96 Os03g0275500 AK060774.1 - Epsin, N-terminal domain containing protein 1e-3 At2g25430 epsin N-terminal homology (ENTH) domain-containing protein O.I. H.G. S.X.
0.20 16.5 0.96 Os07g0471000 AB031396.1 - Protein kinase domain containing protein 6e-3 At5g24360 IRE1-1 (INOSITOL REQUIRING 1-1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
26.1 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
7.1 97.4 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
6.1 97.1 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
6.0 97.0 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
5.4 96.8 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.9 96.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8 96.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.8 96.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.7 96.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
4.7 96.4 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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