CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0399400

Gene name
Homology with Arabidopsis Similar to At3g12500: ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) (HF=4e-2)

Module size 7 genes

NF 0.12

%ile 9.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.47 Os05g0399400 L37289.1 - Chitinase (EC 3.2.1.14) 4e-2 At3g12500 ATHCHIB (ARABIDOPSIS THALIANA BASIC CHITINASE) O.I. H.G. S.X.
0.44 58.1 0.88 Os11g0306400 AK106179.1 - O-methyltransferase, family 2 domain containingprotein 2e-1 At3g16190 isochorismatase hydrolase family protein O.I. H.G. S.X.
0.36 44.0 0.81 Os06g0302000 AK106070.1 - Hypothetical protein 3e+0 At1g06475 unknown protein O.I. H.G. S.X.
0.21 17.9 0.73 Os09g0491100 AY056828.1 - Beta-primeverosidase (EC 3.2.1.149) 9e-1 At3g60120 BGLU27 (BETA GLUCOSIDASE 27) O.I. H.G. S.X.
0.19 15.1 0.81 Os11g0307300 9639.m01888 - Herbicide safener binding protein 6e-1 At3g16190 isochorismatase hydrolase family protein O.I. H.G. S.X.
0.11 6.5 0.77 Os04g0521100 9632.m04226 - Plasma membrane intrinsic protein (Aquaporin) 1e-42 At2g37170 PIP2B (PLASMA MEMBRANE INTRINSIC PROTEIN 2) O.I. H.G. S.X.
0.03 1.4 0.74 Os05g0226900 AF337054.1 - Conserved hypothetical protein 3e-3 At2g43970 La domain-containing protein O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
56.1 99.9 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
24.9 99.5 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
21.9 99.3 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.3 98.6 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.7 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.6 98.5 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.8 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.5 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.100 1 GO:0006032 The chemical reactions and pathways resulting in the breakdown of chitin, a linear polysaccharide consisting of P-1,4-linked N-acetyl-D-glucosamine residues.
0.100 1 GO:0051707 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus from another living organism.
0.074 1 GO:0016998 The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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