CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0386800

Gene name
Homology with Arabidopsis Similar to At5g60920: COB (COBRA) (HF=2e-17)

Module size 6 genes

NF 0.85

%ile 99.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.91 98.9 0.97 Os05g0386800 AK070472.1 - - 2e-17 At5g60920 COB (COBRA) O.I. H.G. S.X.
0.83 95.8 0.96 Os07g0462200 AK059964.1 - Protein of unknown function DUF1218 family protein 3e-2 At1g13380 unknown protein O.I. H.G. S.X.
0.80 94.6 0.96 Os05g0563600 AK099313.1 - Beta-Ig-H3/fasciclin domain containing protein 6e-1 At5g09310 unknown protein O.I. H.G. S.X.
0.73 91.1 0.96 Os07g0208500 AK072356.1 - Cellulose synthase-4 3e-82 At5g05170 CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1) O.I. H.G. S.X.
0.73 91.1 0.96 Os05g0176100 AK067850.1 - Cellulose synthase-1 3e-82 At4g32410 CESA1 (CELLULOSE SYNTHASE 1) O.I. H.G. S.X.
0.67 87.2 0.97 Os09g0494200 AK069564.1 - Glycoside hydrolase, family 19 protein 4e-6 At3g16920 chitinase O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
22.2 99.3 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.7 99.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.5 99.1 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
19.9 99.1 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.4 99.0 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.1 99.0 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.9 99.0 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.8 99.0 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
18.3 98.9 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
18.1 98.9 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.154 2 GO:0030244 The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation.
0.074 1 GO:0007155 The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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