CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0382200

Gene name
Homology with Arabidopsis Similar to At4g23700: ATCHX17 (CATION/H+ EXCHANGER 17) (HF=2e-1)

Module size 42 genes

NF 0.38

%ile 43.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.98 100.0 0.93 Os05g0382200 9633.m02899 - Na+/H+ exchangeing protein-like 2e-1 At4g23700 ATCHX17 (CATION/H+ EXCHANGER 17) O.I. H.G. S.X.
0.57 77.0 0.96 Os03g0717300 9631.m04967 - Conserved hypothetical protein 3e-1 At1g78510 SPS1 (solanesyl diphosphate synthase 1) O.I. H.G. S.X.
0.49 64.4 0.97 Os11g0620200 9639.m03709 - - 8e+0 At5g02640 unknown protein O.I. H.G. S.X.
0.48 63.7 0.97 Os08g0204300 9636.m00998 - - 1e+0 At2g37340 RSZ33 O.I. H.G. S.X.
0.48 63.7 0.95 Os06g0557400 9634.m03444 - Leucine-rich repeat, typical subtype containingprotein 5e-2 At3g53560 chloroplast lumen common family protein O.I. H.G. S.X.
0.48 63.7 0.97 Os03g0162300 AK110675.1 - Hypothetical protein 4e-1 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) O.I. H.G. S.X.
0.48 63.7 0.96 Os01g0202000 NM_188306.1 - - 1e+0 At5g60370 unknown protein O.I. H.G. S.X.
0.48 63.7 0.96 Os01g0553800 9629.m03532 - - 8e-1 At4g09000 14-3-3-like protein GF14 chi / general regulatory factor 1 (GRF1) O.I. H.G. S.X.
0.47 62.3 0.96 Os06g0235100 9634.m01273 - - 6e-1 At1g62333 unknown protein O.I. H.G. S.X.
0.46 60.9 0.96 Os01g0256300 NM_187911.1 - Protein kinase-like domain containing protein 8e-1 At5g55570 unknown protein O.I. H.G. S.X.
0.44 58.1 0.98 Os11g0687700 9639.m04295 - - 3e+0 At4g14540 NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3) O.I. H.G. S.X.
0.42 53.9 0.97 Os12g0511700 9640.m03180 - - 1e-1 At3g03030 F-box family protein O.I. H.G. S.X.
0.42 53.9 0.97 Os09g0251000 9637.m00533 - - 6e+0 At5g64810 WRKY51 O.I. H.G. S.X.
0.41 52.4 0.96 Os09g0474700 9637.m02660 - - 6e+0 At2g19300 unknown protein O.I. H.G. S.X.
0.41 52.4 0.97 Os08g0418400 9636.m03229 - - 7e-4 At1g30475 - O.I. H.G. S.X.
0.41 52.4 0.97 Os03g0692000 9631.m04726 - Glycosyl transferase, family 14 protein 7e-4 At5g15050 glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein O.I. H.G. S.X.
0.40 51.1 0.96 Os12g0145300 9640.m00428 - - 5e+0 At2g05530 glycine-rich protein O.I. H.G. S.X.
0.40 51.1 0.97 Os10g0538001 9638.m03547 - - 8e-1 At3g03020 unknown protein O.I. H.G. S.X.
0.39 48.3 0.97 Os06g0521200 9634.m03088 - Haem peroxidase, plant/fungal/bacterial familyprotein 1e-4 At3g50990 electron carrier/ heme binding / peroxidase O.I. H.G. S.X.
0.38 46.9 0.97 Os04g0274900 9632.m01890 - - 8e-1 At1g15900 unknown protein O.I. H.G. S.X.
0.38 46.9 0.97 Os01g0200900 NM_188288.1 - - 8e-1 At4g31580 SRZ-22 O.I. H.G. S.X.
0.37 45.0 0.97 Os04g0438900 9632.m03451 - - 3e-1 At5g51812 unknown protein O.I. H.G. S.X.
0.37 45.0 0.96 Os02g0258601 9630.m01487 - - 2e+0 At4g28290 unknown protein O.I. H.G. S.X.
0.35 41.7 0.95 Os01g0523000 AK105213.1 - Hypothetical protein 6e+0 At4g21140 unknown protein O.I. H.G. S.X.
0.35 41.7 0.95 Os04g0257500 AK107745.1 - Ethylene-responsive element binding protein 7e-3 At1g06160 ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59) O.I. H.G. S.X.
0.33 38.8 0.96 Os01g0634700 9629.m04279 - - 3e-1 At5g60850 OBP4 O.I. H.G. S.X.
0.33 38.8 0.97 Os06g0171000 9634.m00675 - - 1e+0 At1g11520 pliceosome associated protein-related O.I. H.G. S.X.
0.33 38.8 0.96 Os04g0155100 9632.m00627 - - 1e+0 At3g13130 unknown protein O.I. H.G. S.X.
0.33 38.8 0.97 Os07g0169500 9635.m00686 - - 9e-1 At1g18680 HNH endonuclease domain-containing protein O.I. H.G. S.X.
0.32 36.3 0.96 Os11g0567900 9639.m03242 - - 4e+0 At2g27145 LCR9 (Low-molecular-weight cysteine-rich 9) O.I. H.G. S.X.
0.31 34.5 0.96 Os04g0232500 9632.m01461 - - 1e+0 At1g13440 GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2) O.I. H.G. S.X.
0.31 34.5 0.97 Os02g0245600 9630.m01383 - - 3e-1 At5g60680 unknown protein O.I. H.G. S.X.
0.31 34.5 0.97 Os03g0775900 NM_184907.1 - - 3e+0 At4g24026 unknown protein O.I. H.G. S.X.
0.30 32.7 0.95 Os05g0510600 9633.m04048 - Tryptophan decarboxylase 8e-1 At5g66380 ATFOLT1 (ARABIDOPSIS THALIANA FOLATE TRANSPORTER 1) O.I. H.G. S.X.
0.30 32.7 0.96 Os01g0288100 NM_183572.1 - - 1e-1 At1g07175 unknown protein O.I. H.G. S.X.
0.29 31.1 0.96 Os02g0586600 9630.m03584 - - 4e+0 At3g56490 zinc-binding protein, putative / protein kinase C inhibitor, putative O.I. H.G. S.X.
0.28 31.1 0.95 Os01g0243600 9629.m01391 - Conserved hypothetical protein 3e-1 At1g04635 EMB1687 (EMBRYO DEFECTIVE 1687) O.I. H.G. S.X.
0.27 27.5 0.95 Os01g0255800 9629.m01506 - - 7e-2 At2g16510 vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5) O.I. H.G. S.X.
0.27 27.5 0.96 Os09g0502700 9637.m02858 - - 4e+0 At4g27280 calcium-binding EF hand family protein O.I. H.G. S.X.
0.25 24.1 0.96 Os06g0345800 9634.m02342 - - 1e+0 At5g01070 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.
0.25 24.1 0.97 Os10g0538700 9638.m03552 - - 3e+0 At5g16490 RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4) O.I. H.G. S.X.
0.22 19.4 0.94 Os12g0498100 9640.m03042 - - 1e-1 At2g34820 basic helix-loop-helix (bHLH) family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.
0.98	100.0	0.93	Os05g0382200	9633.m02899	-	Na+/H+ exchangeing protein-like	2e-1	At4g23700	ATCHX17 (CATION/H+ EXCHANGER 17)	O.I.	H.G.	S.X.
0.57	77.0	0.96	Os03g0717300	9631.m04967	-	Conserved hypothetical protein	3e-1	At1g78510	SPS1 (solanesyl diphosphate synthase 1)	O.I.	H.G.	S.X.
0.49	64.4	0.97	Os11g0620200	9639.m03709	-	-	8e+0	At5g02640	unknown protein	O.I.	H.G.	S.X.
0.48	63.7	0.97	Os08g0204300	9636.m00998	-	-	1e+0	At2g37340	RSZ33	O.I.	H.G.	S.X.
0.48	63.7	0.95	Os06g0557400	9634.m03444	-	Leucine-rich repeat, typical subtype containingprotein	5e-2	At3g53560	chloroplast lumen common family protein	O.I.	H.G.	S.X.
0.48	63.7	0.97	Os03g0162300	AK110675.1	-	Hypothetical protein	4e-1	At2g21660	CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2)	O.I.	H.G.	S.X.
0.48	63.7	0.96	Os01g0202000	NM_188306.1	-	-	1e+0	At5g60370	unknown protein	O.I.	H.G.	S.X.
0.48	63.7	0.96	Os01g0553800	9629.m03532	-	-	8e-1	At4g09000	14-3-3-like protein GF14 chi / general regulatory factor 1 (GRF1)	O.I.	H.G.	S.X.
0.47	62.3	0.96	Os06g0235100	9634.m01273	-	-	6e-1	At1g62333	unknown protein	O.I.	H.G.	S.X.
0.46	60.9	0.96	Os01g0256300	NM_187911.1	-	Protein kinase-like domain containing protein	8e-1	At5g55570	unknown protein	O.I.	H.G.	S.X.
0.44	58.1	0.98	Os11g0687700	9639.m04295	-	-	3e+0	At4g14540	NF-YB3 (NUCLEAR FACTOR Y, SUBUNIT B3)	O.I.	H.G.	S.X.
0.42	53.9	0.97	Os12g0511700	9640.m03180	-	-	1e-1	At3g03030	F-box family protein	O.I.	H.G.	S.X.
0.42	53.9	0.97	Os09g0251000	9637.m00533	-	-	6e+0	At5g64810	WRKY51	O.I.	H.G.	S.X.
0.41	52.4	0.96	Os09g0474700	9637.m02660	-	-	6e+0	At2g19300	unknown protein	O.I.	H.G.	S.X.
0.41	52.4	0.97	Os08g0418400	9636.m03229	-	-	7e-4	At1g30475	-	O.I.	H.G.	S.X.
0.41	52.4	0.97	Os03g0692000	9631.m04726	-	Glycosyl transferase, family 14 protein	7e-4	At5g15050	glycosyltransferase family 14 protein / core-2/I-branching enzyme family protein	O.I.	H.G.	S.X.
0.40	51.1	0.96	Os12g0145300	9640.m00428	-	-	5e+0	At2g05530	glycine-rich protein	O.I.	H.G.	S.X.
0.40	51.1	0.97	Os10g0538001	9638.m03547	-	-	8e-1	At3g03020	unknown protein	O.I.	H.G.	S.X.
0.39	48.3	0.97	Os06g0521200	9634.m03088	-	Haem peroxidase, plant/fungal/bacterial familyprotein	1e-4	At3g50990	electron carrier/ heme binding / peroxidase	O.I.	H.G.	S.X.
0.38	46.9	0.97	Os04g0274900	9632.m01890	-	-	8e-1	At1g15900	unknown protein	O.I.	H.G.	S.X.
0.38	46.9	0.97	Os01g0200900	NM_188288.1	-	-	8e-1	At4g31580	SRZ-22	O.I.	H.G.	S.X.
0.37	45.0	0.97	Os04g0438900	9632.m03451	-	-	3e-1	At5g51812	unknown protein	O.I.	H.G.	S.X.
0.37	45.0	0.96	Os02g0258601	9630.m01487	-	-	2e+0	At4g28290	unknown protein	O.I.	H.G.	S.X.
0.35	41.7	0.95	Os01g0523000	AK105213.1	-	Hypothetical protein	6e+0	At4g21140	unknown protein	O.I.	H.G.	S.X.
0.35	41.7	0.95	Os04g0257500	AK107745.1	-	Ethylene-responsive element binding protein	7e-3	At1g06160	ORA59 (OCTADECANOID-RESPONSIVE ARABIDOPSIS AP2/ERF 59)	O.I.	H.G.	S.X.
0.33	38.8	0.96	Os01g0634700	9629.m04279	-	-	3e-1	At5g60850	OBP4	O.I.	H.G.	S.X.
0.33	38.8	0.97	Os06g0171000	9634.m00675	-	-	1e+0	At1g11520	pliceosome associated protein-related	O.I.	H.G.	S.X.
0.33	38.8	0.96	Os04g0155100	9632.m00627	-	-	1e+0	At3g13130	unknown protein	O.I.	H.G.	S.X.
0.33	38.8	0.97	Os07g0169500	9635.m00686	-	-	9e-1	At1g18680	HNH endonuclease domain-containing protein	O.I.	H.G.	S.X.
0.32	36.3	0.96	Os11g0567900	9639.m03242	-	-	4e+0	At2g27145	LCR9 (Low-molecular-weight cysteine-rich 9)	O.I.	H.G.	S.X.
0.31	34.5	0.96	Os04g0232500	9632.m01461	-	-	1e+0	At1g13440	GAPC2 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE C2)	O.I.	H.G.	S.X.
0.31	34.5	0.97	Os02g0245600	9630.m01383	-	-	3e-1	At5g60680	unknown protein	O.I.	H.G.	S.X.
0.31	34.5	0.97	Os03g0775900	NM_184907.1	-	-	3e+0	At4g24026	unknown protein	O.I.	H.G.	S.X.
0.30	32.7	0.95	Os05g0510600	9633.m04048	-	Tryptophan decarboxylase	8e-1	At5g66380	ATFOLT1 (ARABIDOPSIS THALIANA FOLATE TRANSPORTER 1)	O.I.	H.G.	S.X.
0.30	32.7	0.96	Os01g0288100	NM_183572.1	-	-	1e-1	At1g07175	unknown protein	O.I.	H.G.	S.X.
0.29	31.1	0.96	Os02g0586600	9630.m03584	-	-	4e+0	At3g56490	zinc-binding protein, putative / protein kinase C inhibitor, putative	O.I.	H.G.	S.X.
0.28	31.1	0.95	Os01g0243600	9629.m01391	-	Conserved hypothetical protein	3e-1	At1g04635	EMB1687 (EMBRYO DEFECTIVE 1687)	O.I.	H.G.	S.X.
0.27	27.5	0.95	Os01g0255800	9629.m01506	-	-	7e-2	At2g16510	vacuolar ATP synthase 16 kDa proteolipid subunit 5 / V-ATPase 16 kDa proteolipid subunit 5 (AVAP5)	O.I.	H.G.	S.X.
0.27	27.5	0.96	Os09g0502700	9637.m02858	-	-	4e+0	At4g27280	calcium-binding EF hand family protein	O.I.	H.G.	S.X.
0.25	24.1	0.96	Os06g0345800	9634.m02342	-	-	1e+0	At5g01070	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.
0.25	24.1	0.97	Os10g0538700	9638.m03552	-	-	3e+0	At5g16490	RIC4 (ROP-INTERACTIVE CRIB MOTIF-CONTAINING PROTEIN 4)	O.I.	H.G.	S.X.
0.22	19.4	0.94	Os12g0498100	9640.m03042	-	-	1e-1	At2g34820	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
20.7 99.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
17.1 98.8 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.0 98.7 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2 98.5 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8 98.5 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5 98.5 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3 98.4 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3 98.3 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title
20.7	99.2	GSM422672	Drought	GSE16865	Heterologous microarrays for the study of drought stress in Musa
17.1	98.8	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
16.0	98.7	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.2	98.5	GSM377084	Genomic DNA - 45 day old leaf sample - mutant f1856	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.8	98.5	GSM377073	Genomic DNA - 45 day old leaf sample - mutant d2943	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.5	98.5	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.3	98.4	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1	98.4	GSM377076	Genomic DNA - 45 day old leaf sample - mutant g6485	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4	98.3	GSM377071	Genomic DNA - 45 day old leaf sample - mutant d256	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.3	98.3	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.023 1 GO:0006520 The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents.
0.016 1 GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.

SF	Genes	GO ID	Process Name	Link to AmiGO
0.023	1	GO:0006520	The chemical reactions and pathways involving amino acids, organic acids containing one or more amino substituents.
0.016	1	GO:0006979	A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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Gene ID	Os05g0382200
Gene name
Homology with Arabidopsis	Similar to At4g23700: ATCHX17 (CATION/H+ EXCHANGER 17) (HF=2e-1)
Module size	42 genes
NF	0.38
%ile	43.9

Co-expression analysis

Gene ID Os05g0382200 Gene name Homology with ArabidopsisSimilar to At4g23700: ATCHX17 (CATION/H+ EXCHANGER 17) (HF=2e-1) Module size 42 genes NF 0.38 %ile 43.9

Co-expressed genes

Click More genes

Specific experiments for the module

Biological processes inferred to relate to the module

Inter-species module comparison

Select a plant to compare co-expressed genes between species.Arabidopsis_thalianaGlycine_maxHordeum_vulgarePopulus_trichocarpaTriticum_aestivumVitis_viniferaZea_mays

Gene ID Os05g0382200

Gene name
Homology with Arabidopsis Similar to At4g23700: ATCHX17 (CATION/H+ EXCHANGER 17) (HF=2e-1)

Module size 42 genes

NF 0.38

%ile 43.9

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays