CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0379300

Gene name
Homology with Arabidopsis Similar to At2g42390: protein kinase C substrate, heavy chain-related (HF=4e-2)

Module size 6 genes

NF 0.13

%ile 10.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 77.0 0.91 Os05g0379300 AK109293.1 - Hypothetical protein 4e-2 At2g42390 protein kinase C substrate, heavy chain-related O.I. H.G. S.X.
0.80 94.6 0.94 Os01g0358700 9629.m02489 - Powdery mildew resistance protein PM3b 4e-1 At1g79930 HSP91 O.I. H.G. S.X.
0.73 91.1 0.94 Os03g0858800 AK109467.1 - Multi antimicrobial extrusion protein MatE familyprotein 8e-1 At4g22790 MATE efflux family protein O.I. H.G. S.X.
0.08 4.2 0.94 Os09g0265700 9637.m00678 - - 9e+0 At5g28610 - O.I. H.G. S.X.
0.07 3.7 0.94 Os10g0427300 AK119384.1 - MATH domain containing protein 9e-2 At2g25482 - O.I. H.G. S.X.
0.05 2.5 0.94 Os08g0187000 9636.m00829 - - 8e-45 At3g62250 UBQ5 (ubiquitin 5) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
51.7 99.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
31.8 99.7 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
13.3 98.4 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.4 98.3 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
12.1 98.3 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.7 98.2 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM422674 Musa_DNA_RICE GSE16865 Heterologous microarrays for the study of drought stress in Musa
10.6 98.1 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.5 98.1 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.083 1 GO:0006855 The directed movement of drugs across a membrane into, out of, within or between cells.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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