CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0372000

Gene name
Homology with Arabidopsis Similar to At5g16510: reversibly glycosylated polypeptide, putative (HF=8e-2)

Module size 14 genes

NF 0.48

%ile 62.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.69 87.9 0.98 Os05g0372000 AK100218.1 - Conserved hypothetical protein 8e-2 At5g16510 reversibly glycosylated polypeptide, putative O.I. H.G. S.X.
0.72 89.8 0.98 Os07g0268000 9635.m01644 - Cyclin-like F-box domain containing protein 3e-1 At1g67440 emb1688 (embryo defective 1688) O.I. H.G. S.X.
0.69 87.9 0.99 Os07g0130600 AK068045.1 - Protein kinase family protein 9e-5 At4g02410 lectin protein kinase family protein O.I. H.G. S.X.
0.60 79.7 0.99 Os03g0264800 9631.m01532 - AAA ATPase, central region domain containingprotein 1e-16 At1g04730 AAA-type ATPase family protein O.I. H.G. S.X.
0.51 68.7 0.99 Os03g0386600 AK069441.1 - Conserved hypothetical protein 3e-2 At3g63470 scpl40 (serine carboxypeptidase-like 40) O.I. H.G. S.X.
0.48 63.7 0.99 Os02g0735000 9630.m04920 - - 7e-4 At1g02040 zinc finger (C2H2 type) family protein O.I. H.G. S.X.
0.48 63.7 0.98 Os05g0415600 AK065818.1 - - 3e-12 At1g65590 HEXO3 (BETA-HEXOSAMINIDASE 3) O.I. H.G. S.X.
0.47 62.3 0.98 Os01g0504500 AK122047.1 - Multi antimicrobial extrusion protein MatE familyprotein 2e+0 At2g41760 unknown protein O.I. H.G. S.X.
0.44 58.1 0.99 Os01g0390700 CA761520 - - 5e+0 At2g18890 protein kinase family protein O.I. H.G. S.X.
0.40 51.1 0.99 Os12g0509400 AK072889.1 - Polyprotein 3e-1 At1g01380 ETC1 (ENHANCER OF TRY AND CPC 1) O.I. H.G. S.X.
0.38 46.9 0.99 Os03g0163400 9631.m00603 - Conserved hypothetical protein 4e-2 At1g66160 U-box domain-containing protein O.I. H.G. S.X.
0.37 45.0 0.99 Os09g0320000 9637.m01227 - - 2e-1 At4g10480 nascent polypeptide associated complex alpha chain protein, putative / alpha-NAC, putative O.I. H.G. S.X.
0.35 41.7 0.99 Os04g0570700 AK063032.1 - Hypothetical protein 2e-2 At3g56380 ARR17 (ARABIDOPSIS RESPONSE REGULATOR 17) O.I. H.G. S.X.
0.28 31.1 0.99 Os12g0127600 9640.m00254 - WRKY transcription factor 57 4e-4 At5g60140 transcriptional factor B3 family protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
28.3 99.6 GSM422676 Control GSE16865 Heterologous microarrays for the study of drought stress in Musa
16.5 98.8 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.1 98.5 GSM377072 Genomic DNA - 45 day old leaf sample - mutant d1137 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4 98.5 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.1 98.4 GSM377073 Genomic DNA - 45 day old leaf sample - mutant d2943 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0 98.4 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.8 98.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.5 98.2 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377086 Genomic DNA - 45 day old leaf sample - IR64 wtcheck GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.0 98.2 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO
0.051 1 GO:0006306 The covalent transfer of a methyl group to either N-6 of adenine or C-5 or N-4 of cytosine.

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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