CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0366800

Gene name
Homology with Arabidopsis Similar to At4g22100: BGLU3 (BETA GLUCOSIDASE 2) (HF=2e-7)

Module size 7 genes

NF 0.36

%ile 42.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.55 73.7 0.99 Os05g0366800 9633.m02757 - Glycoside hydrolase, family 1 protein 2e-7 At4g22100 BGLU3 (BETA GLUCOSIDASE 2) O.I. H.G. S.X.
0.44 58.1 0.99 Os01g0881000 9629.m06530 - Type III restriction enzyme, res subunit familyprotein 5e-4 At2g13370 CHR5 (chromatin remodeling 5) O.I. H.G. S.X.
0.38 46.9 0.99 Os04g0551000 9632.m04486 - - 3e+0 At2g39470 PPL2 (PsbP-like protein 2) O.I. H.G. S.X.
0.38 46.9 0.99 Os02g0517800 9630.m03010 - - 7e-2 At3g58370 K-Cl Co-transporter type 1 protein-related / KCC1 protein-related O.I. H.G. S.X.
0.34 40.0 0.99 Os10g0461500 NM_196874.1 - - 5e-1 At5g62120 ARR23 (ARABIDOPSIS RESPONSE REGULATOR 23) O.I. H.G. S.X.
0.26 25.6 0.99 Os09g0398501 9637.m02001 - - 3e-1 At3g63052 unknown protein O.I. H.G. S.X.
0.23 21.2 0.99 Os04g0441600 9632.m03474 - - 2e-1 At3g17300 - O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
25.5 99.5 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.6 99.4 GSM377070 Genomic DNA - 45 day old leaf sample - mutant d1 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.2 99.4 GSM377081 Genomic DNA - 45 day old leaf sample - mutant g7534 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
24.1 99.4 GSM377085 Genomic DNA - 45 day old leaf sample - mutant f2045 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
23.8 99.4 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
22.7 99.3 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
21.5 99.2 GSM377080 Genomic DNA - 45 day old leaf sample - mutant g6728 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
20.7 99.2 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
20.2 99.1 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.6 99.1 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
19.1 99.0 GSM377082 Genomic DNA - 45 day old leaf sample - mutant g9799 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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