CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Os05g0365700

Gene name
Homology with Arabidopsis Similar to At4g27820: BGLU9 (BETA GLUCOSIDASE 9) (HF=5e-1)

Module size 7 genes

NF 0.30

%ile 31.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.67 87.2 0.91 Os05g0365700 AK120998.1 - Glycoside hydrolase, family 1 protein 5e-1 At4g27820 BGLU9 (BETA GLUCOSIDASE 9) O.I. H.G. S.X.
0.46 60.9 0.90 Os01g0598200 AK111570.1 - Calcineurin B-like protein 8 2e-1 At4g33000 CBL10 (CALCINEURIN B-LIKE 10) O.I. H.G. S.X.
0.46 60.9 0.91 Os05g0186900 AK111403.1 - Conserved hypothetical protein 7e-1 At1g04250 AXR3 (AUXIN RESISTANT 3) O.I. H.G. S.X.
0.31 34.5 0.91 Os02g0673100 AK108963.1 - Protein of unknown function UPF0005 family protein 2e-3 At2g27240 unknown protein O.I. H.G. S.X.
0.31 34.5 0.94 Os01g0859500 AK101338.1 - Ocs-element binding factor 3.2 3e-4 At5g07600 oleosin / glycine-rich protein O.I. H.G. S.X.
0.22 19.4 0.91 Os04g0630600 AK067411.1 - Conserved hypothetical protein 2e+0 At1g22740 RABG3B O.I. H.G. S.X.
0.10 5.7 0.91 Os02g0814500 9630.m05656 - Phosphate starvation regulator protein (Regulatoryprotein of P- starvation acclimation response Psr1) 5e-1 At3g13040 myb family transcription factor O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.7 98.9 GSM422672 Drought GSE16865 Heterologous microarrays for the study of drought stress in Musa
11.7 98.2 GSM377077 Genomic DNA - 45 day old leaf sample - mutant g6489 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.4 98.2 GSM377075 Genomic DNA - 45 day old leaf sample - mutant g650 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
11.1 98.2 GSM377084 Genomic DNA - 45 day old leaf sample - mutant f1856 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
10.7 98.1 GSM377074 Genomic DNA - 45 day old leaf sample - mutant g282 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.9 98.0 GSM377076 Genomic DNA - 45 day old leaf sample - mutant g6485 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
9.7 98.0 GSM100441 Rice Azucena 1ppm Arsenate Rep1 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate
9.1 97.9 GSM377071 Genomic DNA - 45 day old leaf sample - mutant d256 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.9 97.8 GSM377078 Genomic DNA - 45 day old leaf sample - mutant g6603 GSE15071 Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
8.2 97.7 GSM100442 Rice Azucena 1ppm Arsenate Rep2 GSE4471 Expression data from rice varieties Azucena and Bala grown in 0 and 1ppm arsenate

Biological processes inferred to relate to the module

SF Genes GO ID Process Name Link to AmiGO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera
Zea_mays

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