Co-expression analysis

Gene ID	Os05g0364500
Gene name
Homology with Arabidopsis	Similar to At5g49060: DNAJ heat shock N-terminal domain-containing protein (HF=1e-9)
Module size	6 genes
NF	0.31
%ile	33.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	89.6	0.96	Os05g0364500	AK103527.1	-	Heat shock protein DnaJ family protein	1e-9	At5g49060	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.50	68.0	0.96	Os04g0490700	AK072099.1	-	Conserved hypothetical protein	5e+0	At4g28485	unknown protein	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.44	58.1	0.96	Os02g0150100	AK100093.1	-	The start codon is not identified.	6e-15	At5g51280	DEAD-box protein abstrakt, putative	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.33	38.8	0.96	Os03g0798200	AK071454.1	-	Zn-finger, RING domain containing protein	4e-9	At1g06770	DRIP1 (DREB2A-INTERACTING PROTEIN 1)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.23	21.2	0.96	Os09g0514900	AK102371.1	-	Protein of unknown function DUF654 family protein	2e-2	At2g46900	-	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)
0.17	12.6	0.96	Os07g0660200	AK067331.1	-	Chromodomain-helicase-DNA-binding protein,CHD-1-related	6e-28	At2g13370	CHR5 (chromatin remodeling 5)	O.I.	H.G.	S.X.	Please selectKEGG (integral)Gramene (integral)KaPPA-View 4 (pathway)

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
64.9	99.9	GSM422676	Control	GSE16865	Heterologous microarrays for the study of drought stress in Musa
15.8	98.7	GSM377074	Genomic DNA - 45 day old leaf sample - mutant g282	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.7	98.7	GSM377081	Genomic DNA - 45 day old leaf sample - mutant g7534	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5	98.7	GSM377070	Genomic DNA - 45 day old leaf sample - mutant d1	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.5	98.7	GSM377072	Genomic DNA - 45 day old leaf sample - mutant d1137	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
15.0	98.6	GSM377077	Genomic DNA - 45 day old leaf sample - mutant g6489	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.7	98.6	GSM377075	Genomic DNA - 45 day old leaf sample - mutant g650	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
14.5	98.6	GSM377078	Genomic DNA - 45 day old leaf sample - mutant g6603	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.4	98.5	GSM377080	Genomic DNA - 45 day old leaf sample - mutant g6728	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays
13.0	98.4	GSM377082	Genomic DNA - 45 day old leaf sample - mutant g9799	GSE15071	Detection of genomic deletions in rice by genomic DNA hybridization to oligonucleotide microarrays

Biological processes inferred to relate to the module

SF	Genes	GO ID	Process Name	Link to AmiGO
0.024	1	GO:0006457	The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.

Inter-species module comparison

A co-expression module including the soybean gene, PsAffx.CL406Contig1_at, orthologous to the query gene, Os05g0364500

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	57.1	PsAffx.CL406Contig1_at	At5g49060	-	-	1e+0	At1g13280	AOC4 (ALLENE OXIDE CYCLASE 4)	O.I.	H.G.	S.X.	Please select
0.67	86.1	PsAffx.C129000013_at	At5g49060	-	-	1e-3	At2g36100	integral membrane family protein	O.I.	H.G.	S.X.	Please select
0.67	86.1	PsAffx.C2000250_at	At5g49060	-	-	7e-1	At5g53180	PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.61	81.8	GmaAffx.11802.1.A1_at	At5g49060	-	-	2e-8	At1g11720	ATSS3 (starch synthase 3)	O.I.	H.G.	S.X.	Please select
0.47	66.6	PsAffx.C6000193_at	At5g49060	-	-	1e+1	Atmg00450	-	O.I.	H.G.	S.X.	Please select
0.40	57.1	HgAffx.5776.1.S1_at	At5g49060	-	-	1e+0	At5g59030	COPT1 (copper transporter 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Zea_mays

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